Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq8365 150 2e-31 >seq8365 Length=5311 Score = 150 bits (166), Expect = 2e-31 Identities = 876/1383 (63%), Gaps = 35/1383 (3%) Strand=Plus/Minus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| ||||| ||||||| ||||| | || || ||||| | |||||||| ||| | Sbjct 2374 CCGCAGCACATGCTCATGCGTGTCGCTGTGGGGATACACGGAAATGACATTGACGCTGCC 2315 Query 75272 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 75331 | ||||| || | |||||| || | ||| | ||| ||| |||| || || ||| Sbjct 2314 ATTGAGACGTATAATCTCATGTCCGAACGATGGTTTACTCATGCATCACCGACACTGTTC 2255 Query 75332 AATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCG-CCAACAAGGAGGA 75390 ||||| || || || || || |||||||||| ||| |||| | ||| || || || Sbjct 2254 AATGCCGGAACTCCGCACCCACAATTGTCCAGTTGTTTC-TTATTGACCATGAAAGATGA 2196 Query 75391 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 75450 | || | || || || | || || | | || || || || || || || Sbjct 2195 CAGTATTGAGGGGATTTACGACACACTCAAACAATGCGCTGTCATATCGAAAGCTGCCGG 2136 Query 75451 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAA 75510 ||||| || || | | ||| | || || || || |||| ||| || || Sbjct 2135 TGGTATCGGAATAAATGTTCATTGCATAAGGGCTAAGGGCACTTATATTGCGGGTACGAA 2076 Query 75511 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 75570 ||| |||| |||| | | || ||| | ||||| || ||| || || || || || Sbjct 2075 TGGCATATCAAATGGATTGGTCCCGATGTTGCGCGTGTTCAACAATACTGCCCGATACGT 2016 Query 75571 AAATCAAGCGGGG------CGTCGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCA 75624 |||| | |||| |||| | || | |||| || ||| | ||||| ||||| Sbjct 2015 CGATCAGGGGGGGAACAAACGTCCC---GGCGCTTTCGCAGTTTACATCGAACCGTGGCA 1959 Query 75625 TGCCGATATCATGGAGTTCCTTGAG-TTACGACTCAACCAAGGTGACGAAGAGGCTCGGT 75683 ||||||| | | || ||||| || ||| || ||| ||| || || || | Sbjct 1958 TGCCGATGTATTCGAATTCCTCGACCTTAGGAAG-AACACGGGTTCTGAGGAAATACG-T 1901 Query 75684 GTA-GAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAG 75742 | | | || | || | ||| |||||||| || | |||||||| || ||||| Sbjct 1900 GCACGTGACTTGTTCTATGGCCTTTGGATTCCCGATTTGTTCATGAAACGTGTTGAATCC 1841 Query 75743 GGTGGTCAATGGTCTCTTTTCTGTCCAGAC-AAGGCACCAGGTCTCTCCGACGCGGTGGG 75801 | ||| |||||| | | |||||| || || || || ||| | ||| || ||| Sbjct 1840 GATGGGATATGGTCATTGATGTGTCCACACGAATGC-CCGGGTTTACATGACACGTGGGG 1782 Query 75802 TGAGGAGTTTGAAGCCCTCTACACAAAGTATGAA-GAGGAGGGTAGAGCCAATGCGACTG 75860 | ||| |||||| | | || || || ||| ||| | | | | || || | | Sbjct 1781 TCAGGCGTTTGAGGATTTATATGAGAAATACGAAAGAGAAAAGAAATACAAA--CGTCAG 1724 Query 75861 TACCAGCCGCCGATGTT-TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCA 75919 | | | | | || ||| | || ||| || | | |||| ||||| || ||||| Sbjct 1723 GTTCGGGCTCAGTCATTGTGGTATGCCATTGTCGAGGCTCAGATCGAGACGGGCACACCG 1664 Query 75920 TATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATC 75979 || ||| |||| || || ||| ||| ||| || ||| | ||| | ||||| || Sbjct 1663 TACATGGTTTATAAAGACCATTGCAACCGAAAGTCCAATCAACAAAATCTCGGAACCATT 1604 Query 75980 AAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTT 76039 || |||||||||| ||||| ||||| | || || || | || || | || || Sbjct 1603 AAATGCTCAAATCTATGCACTGAAATCGTTGAATATTCATCTCCCGACGAAATTGCCGTG 1544 Query 76040 TGCAATTTGGCATCAATCGCCCTTCCAAA--GTATGTCAATGAAGAGACTCGCACTTTTG 76097 || |||||||| ||| |||| || ||| || ||| | | || ||||| |||| Sbjct 1543 TGTAATTTGGCTTCAGTCGCACT--CAATCGGTTCGTCGACACCAAAACCCGCACCTTTG 1486 Query 76098 ATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTG 76157 | | | ||| || | || || | || | ||||| ||| |||| | || | Sbjct 1485 ACTTCGCAAAGCTCAAGGATGTCGCTAAAGTCATTACCCGAAACTTAAATAAGATTATCG 1426 Query 76158 ACAGAAATTTTTATCCCGTT---GAGACTGCGCGAAAGTCTAATATGCGACACAGACCTA 76214 | | |||| |||||||||| || || | || || |||| | || | || | Sbjct 1425 ATATTAATTATTATCCCGTTCCTGAAACGGAACGC---TCCAATAAAAGGAACCGTCCGA 1369 Query 76215 TTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCATTTGATT 76274 |||| | || ||||| || | || |||| || ||| | || ||| | ||||| Sbjct 1368 TTGGCATTGGAGTTCAGGGATTAGCCGATGCGTTCATTCTCATGCGTTACCCGTTTGAGA 1309 Query 76275 CAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGG 76334 ||||| || | ||| || || ||||| || | ||| || | || | Sbjct 1308 GTCCCGAAGCGAAACGTCTCAATATTCAAATATTTGAGACATTATATTTCGGGGCTCTCG 1249 Query 76335 AGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCG 76394 | |||||||||||||||| || | ||| | || ||| ||| |||||||||||||| Sbjct 1248 AATCGAGTTGTGAATTGGCACAACAGTATGGTCCTTACGAGTCATATGAGGGTTCTCCCG 1189 Query 76395 CGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCTCAACTACG--A 76452 | || ||||| | || |||| ||| |||| |||| || ||| | | | ||| | | Sbjct 1188 CCTCTAAAGGGATACTGCAGTATGACATGT-GGAATAAGACACCGA-CAGACCTATGGAA 1131 Query 76453 CTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGC 76512 ||| || || |||||| ||||| | | || || | |||||||| ||| | || Sbjct 1130 TTGGACTGAACTGAAGGAAAAGATCAAAATGCACGGACTCAGGAACAGTCTGTTGTTAGC 1071 Query 76513 ACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATA 76572 ||| ||||| || || || || ||||| || ||||| ||||| || | ||||| | || Sbjct 1070 ACCGATGCCGACGGCATCGACAGCACAGATTTTGGGAAATAACGAGTCTGTTGAAGCGTA 1011 Query 76573 CAC 76575 || Sbjct 1010 TAC 1008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595522254953120