Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq21107 138 2e-27 seq128062 134 2e-26 seq68991 129 1e-24 seq32426 123 4e-23 seq17817 109 1e-18 seq14450 105 1e-17 seq918 91.5 3e-13 >seq21107 Length=15695 Score = 138 bits (152), Expect = 2e-27 Identities = 174/239 (73%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || || || || | ||||| |||| ||| | || | |||||| ||||||| Sbjct 13722 ATTTGCATCCCTCCCCTGAGGCGAAGAACCAAATGGAGAGTCGACTCTTTCTGAATATTA 13663 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || ||||| | || | || || |||||||| || || || || | |||||||||| Sbjct 13662 TAATCGGAAAGAGTCCGTCCGTCTTCCAATTGTTTCCCCGCGAAGATGAGTCTCTGTTGA 13603 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || |||||||| || ||||| || | |||| |||| || ||||| || Sbjct 13602 TCCGGGGGAATCCCTTCTTTGTCCTGTATCTTCGCCTTTACATTTTCGATCGTATCCGAC 13543 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 | || ||||| | ||| || |||||||| |||| ||||| ||||| ||||||||||| Sbjct 13542 GGTTCCACTTCCAAAGTGATCGTTTTACCGGTTAATGTTTTCACAAAGATTTGCATTTT 13484 Score = 118 bits (130), Expect = 2e-21 Identities = 136/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237 ||||||||| ||||| | || | ||| || | |||||||||||| ||||| |||| Sbjct 13897 AATATTATAATCGGACAGTGTACGTCCATCTTCGAGTTGTTTTCCGGCGAAAATCAATCG 13838 Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 ||| ||||| || || || || ||||||||||| ||||||| || | ||| ||| || Sbjct 13837 CTGCTGATCGGGGGGAATACCCTCTTTATCTTGAATTTTGGCCTTAACATTCTCAATGGT 13778 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 |||| | ||||||||| | || || ||||| || || || || || || || ||||| Sbjct 13777 ATCGCTCGGCTCAACTTCCAATGTAATGGTTTTGCCGGTGAGAGTCTTGACGAAGATTTG 13718 Query 193358 CAT 193360 ||| Sbjct 13717 CAT 13715 Score = 111 bits (122), Expect = 3e-19 Identities = 166/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| ||||| || || | || | ||| | ||| | || | |||||| |||||| Sbjct 14178 ATTTGCATACCTCCCCTGAGACGCAATACTAAATGGAGAGTCGACTCTTTCTGAATATTG 14119 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || ||| | || | || || ||||||||||| || ||||| | |||||||||| Sbjct 14118 TAATCGCTGAGAGTCCGTCCGTCCTCCAATTGTTTTCCCGCGAAAATAAGTCTCTGTTGA 14059 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || ||||| |||||||| || || |||| || | ||| ||| |||||||| Sbjct 14058 TCCGGGGGAATTCCCTCTTTATCCTGAATCTTGGCCTTAACATTCTCAATGGTATCGGAG 13999 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | || ||||| | ||| || ||||| || || || || || || || || ||||| Sbjct 13998 GGTTCCACTTCCAAAGTGATGGTTTTGCCGGTGAGAGTCTTAACGAAGATCTGCAT 13943 Score = 105 bits (116), Expect = 1e-17 Identities = 133/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237 |||||||||||| || | || | || |||||||||||||||||||| || | | Sbjct 14970 AATATTATAGTCCGAGAGAGTACGGCCGTCCTCTAATTGTTTTCCGGCAAAGATCAGACG 14911 Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 ||| ||||| ||||| || || ||||||||||| ||||| | ||| | ||| || || Sbjct 14910 CTGCTGATCCGGAGGAATCCCCTCTTTATCTTGAATTTTCGCTTTCACGTTTTCGATGGT 14851 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 ||| || | || || || | || || |||||||| || || || || || || || || Sbjct 14850 ATCAGAGGGTTCCACCTCCAATGTGATGGTTTTACCGGTGAGAGTCTTGACGAAGATCTG 14791 Query 193358 CAT 193360 ||| Sbjct 14790 CAT 14788 >seq128062 Length=3476 Score = 134 bits (148), Expect = 2e-26 Identities = 214/303 (71%), Gaps = 12/303 (4%) Strand=Plus/Minus Query 115425 TTTTTTAAAATTTCTAACGGTTAATAAAATCCAAGtttttttAGCTAAATTATTAGGAGA 115484 || ||||||||| | ||||||||||| || ||||||| ||||||||||||||| Sbjct 1557 TTCTTTAAAATTATCAGTTGTTAATAAAATTCATGTTTTTTGTACTAAATTATTAGGAGT 1498 Query 115485 TAttttttttATATCGTTTTGTATGTATTCGTATTTATAAACTATTGGATCGTCATATTT 115544 || ||||| || ||||||||||| ||||| |||| || ||| |||| | | ||| Sbjct 1497 TAAATTTTTAATCTCGTTTTGTATATATTCATATTCTAAAGCTAAAGGATTATTGTGTTT 1438 Query 115545 TATTTCTTTATATTCTA-GTTCGTATTGTTTTAACGATATAATAAAATTTCTTTTATAAT 115603 |||||| |||| | || |||| |||||| ||| ||||||||||||| || Sbjct 1437 AATTTCTGTATAAGAAATATTATTATT-TTTTAAAATCTTAACTAAATTTCTTTTATTAT 1379 Query 115604 CTTTTAATTTTTCAG--AGGTTAGCTTCCTAACCTCTGAAA------CTCCATAGTGAAT 115655 |||| |||||| || | ||| || | |||||| ||||||| ||||| Sbjct 1378 TAGTTAAAATTTCAGGAAGTATGGCT--ATACCTCCTGAAATCTCTTCTCCATAATGAAT 1321 Query 115656 AAATACTAAAATATCATCAGTAATTAACACATCTTTCTGTTCAAATAGCGGATACCATAT 115715 ||| || |||||||| ||| ||||| | || || | |||| | || ||| |||| || Sbjct 1320 AAAATATATAATATCATTAGTTATTAAAATATTCTTTTTTTCAGAAAGTGGAAACCACAT 1261 Query 115716 ATC 115718 ||| Sbjct 1260 ATC 1258 >seq68991 Length=328 Score = 129 bits (142), Expect = 1e-24 Identities = 122/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || ||||||||||||||||| || | | ||||||||| || || || |||||||| Sbjct 16 ATCTTCCAATTGTTTTCCGGCAAAGATCAGACGCTGTTGATCCGGGGGAATCCCTTCTTT 75 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 || |||||||| | ||| | |||| ||||||||||| | || ||||| | || || Sbjct 76 GTCCTGTATTTTCGCTTTGACATTTTCGATAGTATCGGAGGGTTCGACTTCCAATGTAAT 135 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||| || || ||||| || ||||||||||| Sbjct 136 GGTTTTACCGGTGAGAGTTTTCACGAATATTTGCAT 171 >seq32426 Length=2656 Score = 123 bits (136), Expect = 4e-23 Identities = 137/183 (75%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237 |||||| ||||| || | || | || || ||||||||||||||||| || | | Sbjct 251 AATATTGTAGTCCGAGAGAGTACGGCCGTCCTCCAATTGTTTTCCGGCAAAGATCAGACG 310 Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 ||||||||| ||||| || || ||||||||||| ||||||| ||| | ||| ||| || Sbjct 311 CTGTTGATCCGGAGGAATCCCCTCTTTATCTTGAATTTTGGCTTTGACATTCTCAATGGT 370 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 || || | || ||||| | ||| |||||||| || | || ||||| || |||||||| Sbjct 371 GTCTGAGGGTTCCACTTCCAAAGTGATAGTTTTGCCGATGAGTGTTTTCACGAATATTTG 430 Query 193358 CAT 193360 ||| Sbjct 431 CAT 433 >seq17817 Length=30685 Score = 109 bits (120), Expect = 1e-18 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 |||||||| ||||| | || | || || |||||||| || |||||||| | |||| Sbjct 805 ATATTATAATCGGAAAGAGTCCGTCCGTCTTCCAATTGTTTCCCCGCAAAAATGAGTCTC 746 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 |||||||| || || || |||||||| || ||||| || | ||||| ||| || ||| Sbjct 745 TGTTGATCCGGGGGAATCCCTTCTTTGTCCTGTATCTTCGCTTTTACATTCTCTATCGTA 686 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || | || || |||| || || || || || |||| ||||| ||||| |||||| Sbjct 685 TCACTCGGTTCGACCTCTAATGTAATGGTCTTTCCCGTTAATGTTTTCACAAAGATTTGC 626 Query 193359 ATTTT 193363 ||||| Sbjct 625 ATTTT 621 >seq14450 Length=5806 Score = 105 bits (116), Expect = 1e-17 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || |||||||| || || ||||| | |||||||||||| || || ||||| |||||| Sbjct 5314 TCTTCCAATTGTTTCCCCGCGAAAATGAGTCTCTGTTGATCCGGGGGAATTCCCTCTTTA 5373 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || ||||| || | || | ||| ||| ||||| || | || ||||| | ||| || Sbjct 5374 TCCTGTATCTTCGCCTTAACATTCTCAATGGTATCAGACGGTTCCACTTCCAAAGTGATG 5433 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || || |||| || || || || ||||||||||| Sbjct 5434 GTCTTTCCCGTTAATGTCTTAACGAAAATTTGCATTTT 5471 >seq918 Length=8345 Score = 91.5 bits (100), Expect = 3e-13 Identities = 153/220 (70%), Gaps = 11/220 (5%) Strand=Plus/Minus Query 136052 ATAATACATTTATGGATATATTTACGTTTATTGAATACAATAATTATGATTTTAAATTGG 136111 |||| ||||| | |||||||| | ||| | | ||||||||| | |||| || | Sbjct 1757 ATAAAACATTAAAAAATATATTTGAATATATAAATGAAAATAATTATCAAATTAATTTAG 1698 Query 136112 GTAAATGGTTTACTGATATATGGTATCCGTTATTTGAACGTAAAAATATTATTATAACTA 136171 ||| ||||||| |||||||||| | | | ||||||| ||||||||| | || |||| Sbjct 1697 GTACTTGGTTTAAAGATATATGGTTTTCACTTTTTGAACAAAAAAATATTTTGATTACTA 1638 Query 136172 ATAAAATTTTTAATTTTATTT---------ACGATTTTCAGGTGGGGAAATGTTTCCACA 136222 || | || || |||||||||| | ||| | ||| | |||||| ||| | Sbjct 1637 ATGATATATTAAATTTTATTTATATAGAAGAGGATATCCAGATTGGGAAAAATTTATCAA 1578 Query 136223 CCTACAATTTAGATAAATATAT-ACAAAATAAGAAAGATT 136261 ||| ||||| || ||| |||| |||||||| | | ||| Sbjct 1577 CCTGGAATTTGGAGAAA-ATATCTCAAAATAAAAGAAATT 1539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 898074955489680