Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq128062 131 2e-25 seq918 109 8e-19 seq21107 107 3e-18 seq17817 107 3e-18 seq21474 105 1e-17 seq68991 96.9 5e-15 seq32426 86.0 9e-12 seq14450 86.0 9e-12 >seq128062 Length=3476 Score = 131 bits (144), Expect = 2e-25 Identities = 249/363 (69%), Gaps = 20/363 (6%) Strand=Plus/Plus Query 116411 AAGATATATGGTTTCCATTGTTTGAACATAAAGATATGTTGATAACTAATGATATTTTAT 116470 ||||||| ||||||||| | | |||| | || |||| || ||||||||||||||| ||| Sbjct 1256 AAGATATGTGGTTTCCACTTTCTGAAAAAAAGAATATTTTAATAACTAATGATATTATAT 1315 Query 116471 GCTTTATTCATTACGGA------ATTTCAGGGGGCGGAAAGCCGCCCT--CTGTAAATAT 116522 ||||||||||| ||| |||||||| || | |||| || ||| |||| | Sbjct 1316 ATTTTATTCATTATGGAGAAGAGATTTCAGGAGGT--ATAGCCATACTTCCTG-AAATTT 1372 Query 116523 TAAACAAATTATGAAACA--TTTACT--AGATTCAATAAAAAATTATAATTTACAATATA 116578 ||| | ||| || ||| | |||| | ||||| |||||||| ||||| | |||| Sbjct 1373 TAA-CTAATAATAAAAGAAATTTAGTTAAGATTT--TAAAAAATAATAATATTTCTTATA 1429 Query 116579 CTGAANNNNNNNNNNNNNNNNNNNTAGCATTAGAATATGAATATATTCAAAATGATATTA 116638 | ||| |||| ||||||||||||||||| ||||| || |||| Sbjct 1430 CAGAAATTAAACACAATAATCCTTTAGCTTTAGAATATGAATATATACAAAACGAGATTA 1489 Query 116639 AAAGTATAAAGCCTAATAATTTATCTAGAAAAACTTGGATATTGTTATCTACTAGAAATT 116698 ||| | ||| |||||||||||| |||||| || || || ||| | ||| |||| Sbjct 1490 AAAATTTAACTCCTAATAATTTAGTACAAAAAACATGAATTTTATTAACAACTGATAATT 1549 Query 116699 TTAAAAAATTAAT-ATTATCTTTGAGAACTAAAGTAGCTGATGAAATTCGAGATTATTAT 116757 ||||| || | | || || || | || || | |||| | ||| || || |||||| Sbjct 1550 TTAAAGAAGCAGTAATGATGTTGAATAATTATA-AAGCTAAAGAAGTTAGAAGATATTAT 1608 Query 116758 ATA 116760 ||| Sbjct 1609 ATA 1611 Score = 127 bits (140), Expect = 3e-24 Identities = 153/207 (74%), Gaps = 1/207 (0%) Strand=Plus/Plus Query 118750 TATAAAGAAATAAAATATAATGATTCTATTGCGAATGATTATGATTACATTAAAAAAGAG 118809 |||| |||||| ||| | ||| || || | || || ||||| || || |||| ||| Sbjct 1426 TATACAGAAATTAAACACAATAATCCTTTAGCTTTAGAATATGAATATATACAAAACGAG 1485 Query 118810 ATTAATAATTTAACTTCTAATAATTTATTGCAAAAAACATGGATTATATTATCTGTTAAA 118869 ||||| ||||||||| ||||||||||| | ||||||||||| ||| ||||| | | | Sbjct 1486 ATTAAAAATTTAACTCCTAATAATTTAGTACAAAAAACATGAATTTTATTAACAACTGAT 1545 Query 118870 AATTTTAAATATTTAATAATGCGTTTAAATACTAAAATAGCTCAAGAAATTAGAGAATAT 118929 ||||||||| | | ||||| || |||| | | | |||| ||||| ||||| |||| Sbjct 1546 AATTTTAAAGAAGCAGTAATGATGTTGAATAATTATAAAGCTAAAGAAGTTAGAAGATAT 1605 Query 118930 TACATAATATTAGAAGAAATATTATAT 118956 || ||| | |||| ||||||| ||| Sbjct 1606 TATATACAACAAGAA-AAATATTCTAT 1631 Score = 87.8 bits (96), Expect = 3e-12 Identities = 118/162 (73%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 114922 TTAAAAGATAAAAAAGAAATATTAATAACAGATAATTTATTAGAATTTATGGGTTTTATA 114981 ||||||||||| |||||||||||||| || | | ||| || |||||||||||||| | Sbjct 1053 TTAAAAGATAAGAAAGAAATATTAATTACTAACAGTTTGTTGGAATTTATGGGTTTATTG 1112 Query 114982 AATGATGATATACTGCGTGGTAAAGACTGCCACGCAATAATAAGAGATAAGAGGAGAAGA 115041 || | | | || ||| | ||| | ||| | | | | | |||||| | ||| Sbjct 1113 AAA-ACGGGAAACA-CGTCGCAAAAATTGCGATGTGTTTTTTAAAGATAAAAAACATAGA 1170 Query 115042 TATTTAAATTTTTTAAAAGAAAATAATATAGATTATGAAGAA 115083 | | || | ||||||||||||||||||||||||| |||| || Sbjct 1171 TTTATAGAGTTTTTAAAAGAAAATAATATAGATTTTGAACAA 1212 >seq918 Length=8345 Score = 109 bits (120), Expect = 8e-19 Identities = 106/135 (79%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 115168 AAAAAG-TGGATAATATTAAATATAGATGAATTTAAAGAATCTATAATGTTATTAAATAA 115226 |||||| ||||| |||||| || ||| ||||||||| | ||||| | || ||| | Sbjct 2011 AAAAAGATGGATTTTATTAACAATTGATAGTTTTAAAGAAGCAGTAATGATGTTGAATTA 1952 Query 115227 TTCTAAATCTAAAGAAGTACGTACATATTATATACGTTTAGAAAAAATATTTTATTCATA 115286 || |||| |||||||||| | | ||||||||||| |||||||||||||| ||||| || Sbjct 1951 TTATAAAGCTAAAGAAGTTAGAAGATATTATATACAATTAGAAAAAATATTCTATTCTTA 1892 Query 115287 TATAGAGTATACAAA 115301 ||| || ||| |||| Sbjct 1891 TATTGAATATTCAAA 1877 Score = 107 bits (118), Expect = 3e-18 Identities = 100/126 (79%), Gaps = 1/126 (1%) Strand=Plus/Minus Query 118545 TATAGATAATAATGATTATGATTTAAAACTCGGAAGCTGGTTTAAAGATATATGGTTTCC 118604 |||| || | ||| ||||| | | || | || | ||||||||||||||||||||| | Sbjct 1729 TATAAATGAAAATAATTATCAAATTAATTTAGGTACTTGGTTTAAAGATATATGGTTTTC 1670 Query 118605 ATTGTTTGAACAGAAAGATGTTTTAATTACTAATGATATATTGAATTTTATTCATTATGG 118664 | | |||||||| ||| || |||| ||||||||||||||||| ||||||||| | ||| | Sbjct 1669 ACTTTTTGAACAAAAAAATATTTTGATTACTAATGATATATTAAATTTTATTTA-TATAG 1611 Query 118665 AACAGG 118670 || ||| Sbjct 1610 AAGAGG 1605 Score = 102 bits (112), Expect = 1e-16 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 120014 ATAATACTTTAATGGATATATTTACTTTTATTGATTATAATAACTATGATTTAAAACTCG 120073 |||| || |||| |||||||| | ||| || | ||||| ||| | | || | | Sbjct 1757 ATAAAACATTAAAAAATATATTTGAATATATAAATGAAAATAATTATCAAATTAATTTAG 1698 Query 120074 GAAGCTGGTTTAAAGATATATGGTTTCCATTGTTTGAACAGAAAGATGTTATAATAACTA 120133 | | ||||||||||||||||||||| || | |||||||| ||| || || | || |||| Sbjct 1697 GTACTTGGTTTAAAGATATATGGTTTTCACTTTTTGAACAAAAAAATATTTTGATTACTA 1638 Query 120134 ACGAAATATTAAATTTTATTTATA 120157 | || ||||||||||||||||||| Sbjct 1637 ATGATATATTAAATTTTATTTATA 1614 Score = 96.9 bits (106), Expect = 5e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 116339 ATAATACTTTAATGGATATATTTACTTTTATTGATTATAATAACTATGATTTAAAACTCG 116398 |||| || |||| |||||||| | ||| || | ||||| ||| | | || | | Sbjct 1757 ATAAAACATTAAAAAATATATTTGAATATATAAATGAAAATAATTATCAAATTAATTTAG 1698 Query 116399 GAAGCTGGTTTAAAGATATATGGTTTCCATTGTTTGAACATAAAGATATGTTGATAACTA 116458 | | ||||||||||||||||||||| || | |||||||| ||| |||| ||||| |||| Sbjct 1697 GTACTTGGTTTAAAGATATATGGTTTTCACTTTTTGAACAAAAAAATATTTTGATTACTA 1638 Query 116459 ATGATATTTTATGCTTTATTCAT 116481 ||||||| ||| |||||| || Sbjct 1637 ATGATATATTAAATTTTATTTAT 1615 Score = 89.7 bits (98), Expect = 8e-13 Identities = 175/259 (68%), Gaps = 20/259 (8%) Strand=Plus/Minus Query 121730 ATATATTTACTTTTATTAAGGATAATAATTATGATCTGGAATTGGGAGTATGGTTCAGAG 121789 |||||||| | ||| || || ||||||||| | | | || || ||||| | || Sbjct 1742 ATATATTTGAATATATAAATGAAAATAATTATCAAATTAATTTAGGTACTTGGTTTAAAG 1683 Query 121790 ATATTTGGTATCCATTGTTTAATAAAAAAGATGTATTGATAACTAATGATATTTTATGTT 121849 |||| |||| | || | ||| | ||||| || | ||||| ||||||||||| ||| || Sbjct 1682 ATATATGGTTTTCACTTTTTGAACAAAAAAATATTTTGATTACTAATGATATATTAAATT 1623 Query 121850 TTATTTATA---------ATTTTCAgggggggAAACATTTCCACCCCTGGaatatagata 121900 ||||||||| || | ||| |||||| |||| |||||||| | || | Sbjct 1622 TTATTTATATAGAAGAGGATATCCAGATTGGGAAAAATTTATCAACCTGGAATTTGGAGA 1563 Query 121901 aaaattatcaaaataagaaggattataaatcattcctaattaaaaataaaatagattttg 121960 ||| | ||||||||| ||| | ||| |||| || ||| | ||| | |||| Sbjct 1562 AAATATCTCAAAATAA-AAGAA---------ATTTTTAATCAATAATGACATAAAATTTG 1513 Query 121961 atataataaaatatcataa 121979 |||| || ||||| |||| Sbjct 1512 ATATTAT-TAATATGATAA 1495 >seq21107 Length=15695 Score = 107 bits (118), Expect = 3e-18 Identities = 154/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | |||||| | || || ||||| |||||||| ||||| ||| Sbjct 14560 ATGCAAATCTTTGTCAAAACACTCACCGGTAAAACCATTACATTGGAAGTTGAACCGAGC 14619 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || ||| || || ||||| ||||| ||||| || || || || || || Sbjct 14620 GATACCATCGAAAATGTAAAGGCCAAAATTCAAGACAAAGAGGGTATTCCCCCCGATCAG 14679 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||||||||| ||||| || || ||||||||| | || | || ||||||| Sbjct 14680 CAGCGATTGATTTTCGCCGGGAAACAACTCGAAGATGGACGTACACTGTCCGATTATA-- 14737 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTTA 156035 ||||||||| ||| |||| || || ||||| ||| Sbjct 14738 ATATCCAAAAGGAGTCGACTCTCCACTTAGTCTTA 14772 Score = 104 bits (114), Expect = 3e-17 Identities = 173/250 (69%), Gaps = 9/250 (4%) Strand=Plus/Plus Query 155791 TTATTGTTTATAATAAAAAT-TTATGTAAT--------AAAATGCAAATATTTATTAAAA 155841 || ||| ||||| |||| || || |||||| ||||||||||| ||| | |||| Sbjct 13446 TTTTTGATTATATTAAATATATTCTGTAATTTTTAGGCAAAATGCAAATCTTTGTGAAAA 13505 Query 155842 CATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAACGTGA 155901 |||| || || ||||| || || || ||||| ||| || |||| || ||| || | Sbjct 13506 CATTAACCGGTAAAACGATCACTTTGGAAGTGGAACCGTCGGATACGATCGAAAATGTAA 13565 Query 155902 AAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCG 155961 | || ||||| || |||||||| || || || || ||||| ||| | || | || | Sbjct 13566 AGGCGAAGATACAGGACAAAGAAGGGATTCCCCCGGATCAACAGAGACTCATCTTCGCGG 13625 Query 155962 GTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAAGAGGCGACGC 156021 | || || | ||||| | ||| | || ||||||||||| |||||| |||| | Sbjct 13626 GGAAACAATTGGAAGACGGACGGACTCTTTCCGATTATAATATTCAGAAAGAGTCGACTC 13685 Query 156022 TTCATTTAGT 156031 | ||||| || Sbjct 13686 TCCATTTGGT 13695 Score = 95.1 bits (104), Expect = 2e-14 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || || | || || ||||| |||||||| ||||| || Sbjct 13715 ATGCAAATCTTCGTCAAGACTCTCACCGGCAAAACCATTACATTGGAAGTTGAGCCGAGC 13774 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || || ||||| ||||||||||| || || || || || || Sbjct 13775 GATACCATTGAGAATGTTAAGGCCAAAATTCAAGATAAAGAGGGTATTCCCCCCGATCAG 13834 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||||||||| ||||| || || ||||||||| | || | || ||||||||| Sbjct 13835 CAGCGATTGATTTTCGCCGGAAAACAACTCGAAGATGGACGTACACTGTCCGATTATAAT 13894 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTGTTA 156035 || || ||| ||| |||| || || ||||| ||| Sbjct 13895 AT-TCAAAAGGAGTCGACTCTCCACTTAGTCTTA 13927 Score = 86.0 bits (94), Expect = 9e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || | || || ||||| || ||||| || || ||| ||| Sbjct 14788 ATGCAGATCTTCGTCAAGACTCTCACCGGTAAAACCATCACATTGGAGGTGGAACCCTCT 14847 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || |||||||||| ||||| ||||||||||| || || ||||| || || Sbjct 14848 GATACCATCGAAAACGTGAAAGCGAAAATTCAAGATAAAGAGGGGATTCCTCCGGATCAG 14907 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | |||| | |||||| || || | || || | | ||| | || || |||||| Sbjct 14908 CAGCGTCTGATCTTTGCCGGAAAACAATTAGAGGACGGCCGTACTCTCTCGGACTATAAT 14967 Query 156003 ATATCCAAA-GAGGCGACGCTTCA 156025 || || ||| || |||| ||||| Sbjct 14968 AT-TCAAAAGGAATCGACTCTTCA 14990 >seq17817 Length=30685 Score = 107 bits (118), Expect = 3e-18 Identities = 142/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 ||||||||||| ||| | |||||||| || ||||| || ||||||||||| |||||| Sbjct 621 AAAATGCAAATCTTTGTGAAAACATTAACGGGAAAGACCATTACATTAGAGGTCGAACCG 680 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 ||||| || || || ||| || ||||| || |||||||| || || || || Sbjct 681 AGTGATACGATAGAGAATGTAAAAGCGAAGATACAGGACAAAGAAGGGATTCCCCCGGAT 740 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 ||||| ||| | |||| ||| || || || | ||||| | ||| | || |||||| Sbjct 741 CAACAGAGACTCATTTTTGCGGGGAAACAATTGGAAGACGGACGGACTCTTTCCGATTAT 800 Query 156000 AATATATCCAAAGAGG 156015 |||||| |||| ||| Sbjct 801 AATATA--CAAAAAGG 814 >seq21474 Length=6928 Score = 105 bits (116), Expect = 1e-17 Identities = 139/192 (72%), Gaps = 3/192 (2%) Strand=Plus/Minus Query 18127 TTTATTAATTATGTGATTATAATATAATAAACACGCAAAATCAGTGTGTAAACCTTCATC 18186 |||||||| || || ||| | | ||||||||| |||||| || | || ||||| Sbjct 5898 TTTATTAACGATATGTTTAAAG---AGTAAACACGCGAAATCACAATGAAGTCCCTCATC 5842 Query 18187 TCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCATTATACCTCttttttttAGCCA 18246 | ||||| | ||| ||||| || || || || ||||| | || | ||| |||||||| Sbjct 5841 ACGTGATATCAGTTCATTACTGAAGGTCAATCCCGGCATAAGTCCACGTTTCTTTAGCCA 5782 Query 18247 AAATATCGATGCGAAACTACTAGAAAAGAATATACCCTCAACGCACGCGAACGCTATTAA 18306 |||||| || ||||| || |||||||||||||||||| | || ||||| | ||| Sbjct 5781 AAATATTGAGGCGAATGAACCGCTAAAGAATATACCCTCAACTGATGCAAACGCAACTAA 5722 Query 18307 TCTTTCAGCAAA 18318 | ||| ||||| Sbjct 5721 ACGTTCGGCAAA 5710 >seq68991 Length=328 Score = 96.9 bits (106), Expect = 5e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||||||||| | ||||| | || || ||||| |||||||| ||||||||| || Sbjct 171 ATGCAAATATTCGTGAAAACTCTCACCGGTAAAACCATTACATTGGAAGTCGAACCCTCC 112 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| || ||| |||||||| || |||||||| || || || || ||| Sbjct 111 GATACTATCGAAAATGTCAAAGCGAAAATACAGGACAAAGAAGGGATTCCCCCGGATCAA 52 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || | |||| | |||||| || || | |||||| Sbjct 51 CAGCGTCTGATCTTTGCCGGAAAACAATTGGAAGAT 16 >seq32426 Length=2656 Score = 86.0 bits (94), Expect = 9e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||||||||| | |||||| | | || |||||||| || || ||||| ||| || Sbjct 433 ATGCAAATATTCGTGAAAACACTCATCGGCAAAACTATCACTTTGGAAGTGGAACCCTCA 374 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || ||| ||||| ||||||||||| || || ||||| || ||| Sbjct 373 GACACCATTGAGAATGTCAAAGCCAAAATTCAAGATAAAGAGGGGATTCCTCCGGATCAA 314 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | |||| | |||||| || || | || || | | ||| | || || || ||| Sbjct 313 CAGCGTCTGATCTTTGCCGGAAAACAATTGGAGGACGGCCGTACTCTCTCGGACTACAAT 254 Query 156003 ATATCCAAA-GAGGCGACGCTTCA 156025 || || ||| || |||| ||||| Sbjct 253 AT-TCAAAAGGAATCGACTCTTCA 231 >seq14450 Length=5806 Score = 86.0 bits (94), Expect = 9e-12 Identities = 137/196 (70%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 ||||||||||| || |||| ||||| || ||||| || || || || ||||| ||| Sbjct 5471 AAAATGCAAATTTTCGTTAAGACATTAACGGGAAAGACCATCACTTTGGAAGTGGAACCG 5412 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 ||||||| ||| || || || || ||||| |||||||| || || || || || Sbjct 5411 TCTGATACCATTGAGAATGTTAAGGCGAAGATACAGGATAAAGAGGGAATTCCCCCGGAT 5352 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 ||||| ||| | |||| || || || || | ||||| | ||| | |||||| Sbjct 5351 CAACAGAGACTCATTTTCGCGGGGAAACAATTGGAAGACGGACGGACTCTGAGTGATTAT 5292 Query 156000 AATATATCCAAAGAGG 156015 |||||| |||| ||| Sbjct 5291 AATATA--CAAAAAGG 5278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 730587116368400