Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq5884 113 1e-19 seq9237 107 6e-18 >seq5884 Length=32987 Score = 113 bits (124), Expect = 1e-19 Identities = 224/330 (68%), Gaps = 4/330 (1%) Strand=Plus/Plus Query 289016 CGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTT 289075 ||| |||||| || || ||||||||||| || || || | | ||||| | || | Sbjct 31105 CGCCCCTTTTACGTCCGACGGCATCAATTTCATCGATAAACAAAATGCACGGCGCGTTCT 31164 Query 289076 GTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTA 289135 || || |||| ||| | || | ||||| || | || | ||| ||| |||| || | Sbjct 31165 TTCGTGCCATTGAAAACATGTCACGAACACGTGACGGACCGACACCGACAAACATCTCAA 31224 Query 289136 CAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCG 289195 |||||| || | || || || |||| ||||| ||||||||||| |||| | | Sbjct 31225 GAAATTCCGATCCCGAAACACTTATAAATGGCACATTCGCTTCGCCTGCGGTTGCCTTTG 31284 Query 289196 CCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTG 289255 | || || || ||||| || || || || ||| |||||| | |||||||| | ||| | Sbjct 31285 CGAGTAGAGTTTTACCAGTACCGGGCGGACCCGTTAATAGTGCCCCCTTTGGGATTTTAG 31344 Query 289256 CCCCAGCAGACTTA--TATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTC 289313 | || || | || |||| | ||| | || || || | ||||| |||| | || Sbjct 31345 CACC--CAAATCTAAGTATTGTTGAGGATTTTTCAAGAAATTTACAAATTCCATTATCTC 31402 Query 289314 ATATTTTGCCTCATCACATCCTGCTACATC 289343 | ||||||||| ||||| || || ||||| Sbjct 31403 AATTTTTGCCTCTTCACACCCCGCGACATC 31432 >seq9237 Length=19728 Score = 107 bits (118), Expect = 6e-18 Identities = 202/294 (69%), Gaps = 6/294 (2%) Strand=Plus/Minus Query 302553 ATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGT 302612 ||||||| |||||||| |||||| || ||||| || |||||||||||||| || Sbjct 9713 ATCATAAGTAATCATAACTGATTCCATGGCTTTCATTAACCGTCGCTGAATATAACCGGT 9654 Query 302613 TGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAA 302672 | || |||||| ||||| |||||||| || || ||||||| ||||| | ||||| || Sbjct 9653 TTCAGCTGTTTTCACAGCCGTATCAATAAGTCCCTCACGACCGCCCATTGAGTGGAAAAA 9594 Query 302673 TAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG 302732 | ||| ||| || ||| | | | | || | |||||||||||||| | || || Sbjct 9593 GAATTCTGATGGTGTAAGACCCGCGAGATATGAATTTTCAACGAAACCACGTGATTCAGG 9534 Query 302733 --CG-AATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGAT 302789 || |||| || || | || || || | |||| || | ||| | || || Sbjct 9533 ACCGTAATCATC---TTTAATGAAATGGGGTAACGTCCGTTTGCGGAATCCGAACGGAAT 9477 Query 302790 ACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 || || || || |||||||| || || | || | ||| | |||||| ||||| Sbjct 9476 TCGTTTCCCTTCGACGTTCTGTTGACCGACACATGCAATGACCTGCGATATATT 9423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1469169060089313