Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq17817 87.8 1e-12 >seq17817 Length=30685 Score = 87.8 bits (96), Expect = 1e-12 Identities = 117/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 107550 TTTAAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG 107609 || ||||||||||| ||||| ||||| ||||| || || |||||||| | || || Sbjct 618 TTAAAAATGCAAATCTTTGTGAAAACATTAACGGGAAAGACCATTACATTAGAGGTCGAA 677 Query 107610 GCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTG 107669 | | ||||| | | | |||||| ||||| || |||||||| | ||| | Sbjct 678 CCGAGTGATACGATAGAGAATGTAAAAGCGAAGATACAGGACAAAGAAGGGATTCCCCCG 737 Query 107670 GATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACG 107712 ||||| |||||||| |||| |||||| ||||| |||| |||| Sbjct 738 GATCAACAGAGACTCATTTTTGCGGGGAAACAATTGGAAGACG 780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398194033731361