Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq32426 129 5e-25 seq21107 116 3e-21 seq68991 102 6e-17 >seq32426 Length=2656 Score = 129 bits (142), Expect = 5e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | || ||||| || | ||||| || ||||| |||||||| || || |||| Sbjct 207 CCTCCGCGCAGACGCAAGACGAGGTGAAGAGTCGATTCCTTTTGAATATTGTAGTCCGAG 266 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || || || || | |||||| || ||| | |||| | || |||||||| ||| Sbjct 267 AGAGTACGGCCGTCCTCCAATTGTTTTCCGGCAAAGATCAGACGCTGTTGATCCGGAGGA 326 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || |||||||| ||||| |||||| | ||||||| | || | ||||| || |||| || Sbjct 327 ATCCCCTCTTTATCTTG-AATTTTGGCTTTGACATTCTCAATGGTGTCTGAGGGTTCCAC 385 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| | ||| ||||||||||| | | ||||| || ||||| ||||| Sbjct 386 TTCCAAAGTGATAGTTTTGCCGATGAGTGTTTTCACGAATATTTGCAT 433 Score = 95.1 bits (104), Expect = 9e-15 Identities = 151/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| | ||| || || || || || || |||||||| ||||||| | | || || Sbjct 445 ACGTAACACTAAGTGGAGAGTCGACTCCTTTTGAATATTATAATTGGACAGTGTACGTCC 504 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| ||||||||||| || | | ||||||| |||||||| || |||||||||||||| Sbjct 505 ATCTTCGAGTTGTTTCCCGGAGAAGATCAATCGCTGCTGATCGGGAGGAATACCCTCTTT 564 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||| |||| ||| || ||| |||| | || || | || ||||| | || || Sbjct 565 GTCCTGTATTTTGGCCTTTACATTTTCGATGGTATCGCTCGGCTCAACTTCCAATGTAAT 624 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || ||| || || | ||||| | || || ||||| Sbjct 625 AGCTTTACCGGTGAGTGTTTTGAAAAGGATTGGCATT 661 >seq21107 Length=15695 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | || ||||| || | ||||| || ||||| |||||||| ||||| |||| Sbjct 15014 CCTCCGCGCAGACGCAAGACGAGGTGAAGAGTCGATTCCTTTTGAATATTATAGTCCGAG 14955 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || || || || | |||||| || ||| | |||| | ||||||||||| ||| Sbjct 14954 AGAGTACGGCCGTCCTCTAATTGTTTTCCGGCAAAGATCAGACGCTGCTGATCCGGAGGA 14895 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || |||||||| ||||| |||||| | ||| || |||| | || ||||| |||| || Sbjct 14894 ATCCCCTCTTTATCTTG-AATTTTCGCTTTCACGTTTTCGATGGTATCAGAGGGTTCCAC 14836 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | || || ||||| || || | || || || || |||||||| Sbjct 14835 CTCCAATGTGATGGTTTTACCGGTGAGAGTCTTGACGAAGATCTGCAT 14788 Score = 114 bits (126), Expect = 1e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 || || || || || || || ||||| || |||||||| | | || || ||| ||| Sbjct 14768 ACTAAGTGGAGAGTCGACTCCTTTTGGATATTATAATCGGACAGTGTACGTCCATCTTCG 14709 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 |||||||| || || | ||||||| |||||||| || |||||||||||||||||||| Sbjct 14708 AGTTGTTTCCCGGCGAAAATCAATCGCTGCTGATCGGGGGGAATACCCTCTTTGTCTTG- 14650 Query 29698 AATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTT 29756 |||||| | || ||| |||| | || || |||| ||||| | || || ||||| Sbjct 14649 AATTTTGGCCTTTACATTTTCGATGGTATCGCTCGGTTCAACTTCCAATGTAATGGTTTT 14590 Query 29757 GCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || | ||||| ||||| || ||||| Sbjct 14589 ACCGGTGAGTGTTTTGACAAAGATTTGCAT 14560 Score = 102 bits (112), Expect = 6e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 || || || || || || || |||||||| |||||||| | | || || ||| ||| Sbjct 13923 ACTAAGTGGAGAGTCGACTCCTTTTGAATATTATAATCGGACAGTGTACGTCCATCTTCG 13864 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 |||||||| || || | ||||||| |||||||| || |||||||||||||| ||||| Sbjct 13863 AGTTGTTTTCCGGCGAAAATCAATCGCTGCTGATCGGGGGGAATACCCTCTTTATCTTG- 13805 Query 29698 AATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTT 29756 |||||| | || ||| | || | || || | || ||||| | || || ||||| Sbjct 13804 AATTTTGGCCTTAACATTCTCAATGGTATCGCTCGGCTCAACTTCCAATGTAATGGTTTT 13745 Query 29757 GCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| || | || || || || || ||||| Sbjct 13744 GCCGGTGAGAGTCTTGACGAAGATTTGCAT 13715 Score = 98.7 bits (108), Expect = 8e-16 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 ||||| |||||||| || || || ||||| ||||| || ||||| | || || Sbjct 14385 CGCAGTACCAAATGGAGAGTCGACTCTTTCTGAATATTGTAATCGCTGAGAGTCCGTCCG 14326 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || | |||||| || ||| | ||||| | |||||||| || ||||| ||||||||| Sbjct 14325 TCCTCCAATTGTTTCCCCGCAAAAATCAACCGCTGCTGATCGGGGGGAATTCCCTCTTTG 14266 Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||| ||| || | || || |||| | ||| ||||| |||| || || | || || Sbjct 14265 TCTTG-AATCTTAGCCTTAACGTTTTCGATAGTATCAGACGGTTCCACCTCCAATGTGAT 14207 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || | || || || || || ||||| Sbjct 14206 GGTCTTTCCGGTGAGTGTCTTGACGAAGATTTGCAT 14171 >seq68991 Length=328 Score = 102 bits (112), Expect = 6e-17 Identities = 110/143 (77%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| | |||||||||||| || || || ||||||||||||||||| | || || Sbjct 184 ACGTAACACCAAATGAAGTGTCGACTCCTTTTGAATGTTATAATCACTGAGTGTACGTCC 243 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | |||||| || ||| | |||| | || |||||||| |||||||||||||| Sbjct 244 ATCTTCCAATTGTTTCCCGGCAAAGATCAGACGCTGTTGATCCGGGGGAATACCCTCTTT 303 Query 29691 GTCTTGTAATTTTTG-TTTGACA 29712 ||||| |||||| | ||||||| Sbjct 304 ATCTTG-AATTTTAGCTTTGACA 325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 384559811748309