Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq12381 201 8e-46 seq16054 140 2e-27 seq14641 138 8e-27 seq103556 116 3e-20 seq36471 91.5 1e-12 >seq12381 Length=2337 Score = 201 bits (222), Expect = 8e-46 Identities = 726/1114 (65%), Gaps = 20/1114 (2%) Strand=Plus/Plus Query 281416 TTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAAT 281475 ||||| |||| | ||||||||||| || || | ||| | || || ||||| ||||| Sbjct 1226 TTTATTGACGGCCGAAACATTAAGAATGCCGTTCGAATCGATCTCGAAAGTGACCTCAAT 1285 Query 281476 TTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATT 281535 ||| |||| ||||| || | || || || || ||| | ||| | || || ||| Sbjct 1286 TTGGGGGATACCTCTGGGAACGGGCGGAATGCCGGTCAATTCGAATTTACCGAGCAAATT 1345 Query 281536 ATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATT 281595 || ||||| || | |||||||| || | | || || || | | ||||| Sbjct 1346 GTTGTCTTTCGTCATGGCACGTTCACCTTCATATACCTGAATCAATACCCCCGGTTGAT- 1404 Query 281596 ATCTGAA-TAAGTTGTAAATACTCTGGATTTTTTACAAGGA-ATTGTTGTGTTTCTATCA 281653 || || ||||| || ||| |||| | | | | || || || ||||| | ||| Sbjct 1405 ATTTGCTGTAAGTGGTGAATG-TCTGTGTCTGTCGCGTGGGGATAGTGGTGTTACGCTCA 1463 Query 281654 ATAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCA 281713 |||| ||||| | ||||| || ||||| | || || || || ||||||||||| Sbjct 1464 ATAAAGGCAGTCATGACCCCACCGGCAGTTTCAATGCCGAGTGAGAGTGGAGTGACATCC 1523 Query 281714 ACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGAC--CAACAAGAATAGCTGCTTGAA 281771 | || | | | ||| | ||| | |||| | || ||| || || || |||| Sbjct 1524 AAAAGTAGGAGCTCCAGAACCTGTTC--CGATTTGTCGCCATTAAGTATGGCCGCCTGAA 1581 Query 281772 TAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCAT 281831 || ||||| || || || ||||| || || || | ||| || |||| |||||||| Sbjct 1582 CTGCCGCACCGTACGCCACTGCTTCGTCGGGGTTTATGCTTTTGTTCAGTTCTTTACCAT 1641 Query 281832 TGAAAAAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAAT 281890 ||||||| | |||||||| ||| | ||| || || || | ||||| || || || Sbjct 1642 TGAAAAAGTCCTGAAGAAGTT-TCTGGATCTTCGGTATGCGCGTCGATCCCCCGACCAAC 1700 Query 281891 ACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGT 281950 ||||| || || ||| || |||||||| ||| | || | ||||| || || Sbjct 1701 ACAATGTCGTGAACCGCTGCTTTATCCATTTTCGCGTCTCTGAGTGACTTTTCCACCGGA 1760 Query 281951 TCAAGACCAGCT-CTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGT-AAGAG 282008 || ||| ||| || || | ||| | || ||||| || || | || | | Sbjct 1761 TCGAGA-GTGCTCCTGAAGAGGTCAGCGTTCAGCTCTTCAAACCGCGCACGTGTGATGTT 1819 Query 282009 TGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAG 282068 ||| | |||| || || ||||||| || || | ||||| | | ||||| || | Sbjct 1820 TGA-GTAGAAATCGATGCCCTCGAACAGTGAGTCGATCTCAATACTCGCCTGAGTTGATG 1878 Query 282069 AAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTG 282128 | |||| | ||||| || | ||| || | || | || | || || || | | Sbjct 1879 ATGATAACGTGCGTTTCGCTCTTTCGCAGGACGTGCGGAGACGTCTCAACGC--GCGTTT 1936 Query 282129 ATT-GATTC-AAATCTGTTTTATATTTTCTCTTGAAATCTTCAAC-ACACCATGTTACAA 282185 ||| ||| | ||||| | |||| ||| | || || || | ||| | | || | || | Sbjct 1937 ATTCGATGCTAAATCCTTCTTATGTTTGCGTTTAAATTCCTGAACGAAATGAT-TCACCA 1995 Query 282186 GACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGA 282245 ||||| ||||| ||||| |||||||| | |||| ||| | || | | | |||| || Sbjct 1996 TGCGATTGTCAAAGTCTTCGCCTCCCAAATGCGTATCTCCGGCGGTGGATTTCACTTCGA 2055 Query 282246 AAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAA 282305 | | || || |||| | | | | ||||| || || || |||| ||| || | Sbjct 2056 ATATACCGTCCTCAATGGTAAGTATCGACACATCGAAAGTGCCGCCCCCCAAATCGAAGA 2115 Query 282306 TAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAG 282365 | || |||||| | ||| | || ||||| |||||||| |||| || || |||| Sbjct 2116 TGAGGACATTCCTCTCTCCCTGACCCTTCTTATCGAGACCATAGGCAATGGCTGCGGCAG 2175 Query 282366 TTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGG 282425 | ||||| || || || | ||| || || ||||| || || |||| || ||||| |||| Sbjct 2176 TCGGTTCGTTGATGATACGCAACACGTTGAGACCGGCGATGGTTCCGGCGTCTTTCGTGG 2235 Query 282426 CTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTT 282485 | || | ||| || || || ||||| || || ||||||| ||||| | || || | Sbjct 2236 CCTGACGTTGGGAGTCATTGAAATAGGCGGGGACAGTAACGACGGCGTTAGTGACGGTCT 2295 Query 282486 TTCCAATATAAGCGCTTGCTGTTTGTTTCATTTT 282519 |||| |||||||| |||| ||| |||||||| Sbjct 2296 TTCCCATATAAGCCTCTGCTATTTCCTTCATTTT 2329 >seq16054 Length=2514 Score = 140 bits (154), Expect = 2e-27 Identities = 244/351 (70%), Gaps = 8/351 (2%) Strand=Plus/Plus Query 282184 AAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTG 282243 || ||| | ||||||||||||||||||||| | ||||| || || || | ||||| Sbjct 1549 AACACGCTGATCAAAATCTTCACCTCCCAAATGTGTATTGCCATTTGTTGCCATAACTTG 1608 Query 282244 GAAAAGTCCATCT-TCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAA 282302 ||| | || || |||| | || || | |||||| || || || |||| |||| Sbjct 1609 -AAATGCCCCACTGTCAATGGTCAGTAGTGATACATCAAAAGTCCCTCCCCCCAAATCAT 1667 Query 282303 AAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAG 282362 | | ||||||| || || || ||| | || | | |||||| |||| || |||| Sbjct 1668 ATACAAGTACAGTCTTTACTC---CTT---TATTGTAGAAACCATAAGCAATGGCTGCAG 1721 Query 282363 CAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAG 282422 | ||||||||||| |||||||| | || ||| | || || ||| | || |||| ||| | Sbjct 1722 CTGTTGGTTCATTGATAATTCTGATAATATTTAAGCCCGCGATTGTACCGGCATTTTTGG 1781 Query 282423 TGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTT 282482 | || |||| ||| | ||| || ||||| || || || |||| || || | ||| |||| Sbjct 1782 TCGCCTGTCGTTGAGCATCATTGAAATACGCCGGTACCGTAACCACAGCGTGTGTCACTT 1841 Query 282483 CTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTG 282533 ||| | ||| || ||| |||| ||||||||| | || | ||||| Sbjct 1842 TCACTCCTAAATATGCTTCTGCCGTTTCTTTCATTTTCGTCAATACCATTG 1892 >seq14641 Length=26203 Score = 138 bits (152), Expect = 8e-27 Identities = 238/341 (70%), Gaps = 10/341 (3%) Strand=Plus/Minus Query 282190 ATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAG 282249 ||||||||| |||||||| || || |||| || || | | | || | |||| Sbjct 5788 ATTATCAAAGTCTTCACCGCCTAAGAACGTATCCCCATTGGTTGATTTAACCTCAAAAAC 5729 Query 282250 TCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAG 282309 ||| | || | ||||| | |||||| || || || |||| |||| ||| Sbjct 5728 TCCTTTTTGTATCTCCAAAATGGACACATCAAATGTCCCGCCCCCCAAATCATAAACGG- 5670 Query 282310 TACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGG 282369 || ||| |||| || | |||| || | |||||||||| || || || || || Sbjct 5669 --CAATCA---CTTTATCCTCAGTTTTGTCCATTCCATACGCAATGGCGGCTGCGGTCGG 5615 Query 282370 TTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTG 282429 |||||||||| |||||||||||| ||||| || ||| ||| |||||||| ||||| || Sbjct 5614 CTCATTAATAACTCTCAAAACATTGAGACCCGCGATTTGTCCGGCATCTTTCGTGGCCTG 5555 Query 282430 TCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTT--T 282487 | ||||| || |||||||| || || |||||||||||||||| | ||| ||| | Sbjct 5554 ACGCTGTGAGTCATTAAAATACGCGGGTACAGTAATAACGGCAT-TCTTAACGGTTTGAT 5496 Query 282488 CCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAAT 282528 ||| ||| || |||||||| |||||||| |||| || Sbjct 5495 TCAA-ATATGCTTCTGCTGTTTCCTTCATTTTGGTTAATAT 5456 >seq103556 Length=230 Score = 116 bits (128), Expect = 3e-20 Identities = 149/203 (73%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAAC- 282390 ||||| || |||||||| |||| || ||||| || ||||| || ||||| |||||| Sbjct 19 TTTTTGTCGAGACCATAAGCAATGGCCGCAGCTGTGGGTTCGTTGATAATCTGCAAAACG 78 Query 282391 ATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATA 282450 | ||| ||| || ||| || ||||||||||| || |||| ||||| ||| ||||| || Sbjct 79 ACTAA-ACCTGCGATTGCACCGGCATCTTTAGTTGCCTGTCGTTGTGCATCATTAAAGTA 137 Query 282451 TGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTG 282510 || || || |||| || || | || ||||| ||||| | ||| || ||| |||| Sbjct 138 CGCGGGTACCGTAACCACAGCGTATGATACTTTCTTTCCCAAATATGCTTCTGCCGTTTC 197 Query 282511 TTTCATTTTACTTAAAATCATTG 282533 |||||||| | || | ||||| Sbjct 198 CTTCATTTTGATCAACACCATTG 220 >seq36471 Length=27448 Score = 91.5 bits (100), Expect = 1e-12 Identities = 119/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 637120 ATTATTGTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACATTTAAGA 637179 ||| |||| ||||| ||| |||||| | ||||||||||||||| | |||||||| ||| Sbjct 15663 ATTGTTGTTGATTACAGTTCGCCAAATGTCGCTAAAGAAATGCATGTCGGACATTTGAGA 15722 Query 637180 TCAACTATTATTGGTGAATCTATTTGTAGGGTATTAGAAATGTGTGGACACGATGTTTAT 637239 ||||| |||||||| |||| | | || || | | || ||||||| | Sbjct 15723 AGCACTATCATTGGTGATAGCATTTCAAATCTGTTTGAGTTCTTAGGTTACGATGTCTTA 15782 Query 637240 CGTATTAATCATGTGGGTGATTGGGGAACTCAATTCGGTATGTTA 637284 | || ||||| | ||||||||||||||||| || || ||| || Sbjct 15783 AGAATCAATCACATCGGTGATTGGGGAACTCAGTTTGGGATGCTA 15827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3733734947637474