Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq21107 187 5e-42 seq17817 163 6e-35 seq14450 161 2e-34 seq32426 159 7e-34 seq21020 125 1e-23 seq68991 86.0 1e-11 >seq21107 Length=15695 Score = 187 bits (206), Expect = 5e-42 Identities = 178/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| || | || ||||| || || ||||| || |||||||| ||||||||||| || Sbjct 13713 CCTCCCCTGAGGCGAAGAACCAAATGGAGAGTCGACTCTTTCTGAATATTATAATCGGAA 13654 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | |||||||| | |||||| || || ||||| ||||| |||||||| || || Sbjct 13653 AGAGTCCGTCCGTCTTCCAATTGTTTCCCCGCGAAGATGAGTCTCTGTTGATCCGGGGGA 13594 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||| || || || ||||| || ||||||||||| |||||||| ||||| ||| Sbjct 13593 ATCCCTTCTTTGTCCTGTATCTTCGCCTTTACATTTTCGATCGTATCCGACGGTTCCACT 13534 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||||||| ||||| || || || || || || ||||| || |||||| Sbjct 13533 TCCAAAGTGATCGTTTTACCGGTTAATGTTTTCACAAAGATTTGCATT 13486 Score = 174 bits (192), Expect = 3e-38 Identities = 176/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| || | ||||| ||||| || ||||| || |||||||| ||||| ||||| Sbjct 14171 TACCTCCCCTGAGACGCAATACTAAATGGAGAGTCGACTCTTTCTGAATATTGTAATCGC 14112 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| | | ||||| || | ||||||||| || || || ||||| |||||||| || | Sbjct 14111 TGAGAGTCCGTCCGTCCTCCAATTGTTTTCCCGCGAAAATAAGTCTCTGTTGATCCGGGG 14052 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||| || ||||| |||||||| || || ||||| ||||| ||||| ||||| | Sbjct 14051 GAATTCCCTCTTTATCCTGAATCTTGGCCTTAACATTCTCAATGGTATCGGAGGGTTCCA 13992 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||||| || || ||||| || | ||||| || || |||||||| Sbjct 13991 CTTCCAAAGTGATGGTTTTGCCGGTGAGAGTCTTAACGAAGATCTGCAT 13943 Score = 163 bits (180), Expect = 6e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 |||||| | || ||||| || | ||| ||||| ||||| || || |||||||| || || Sbjct 15015 ACCTCCGCGCAGACGCAAGACGAGGTGAAGAGTCGATTCCTTTTGAATATTATAGTCCGA 14956 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 ||| | | ||||| |||| ||||||||| |||||||| || | || ||||| ||||| Sbjct 14955 GAGAGTACGGCCGTCCTCTAATTGTTTTCCGGCAAAGATCAGACGCTGCTGATCCGGAGG 14896 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || || || ||||||||||| || ||||| || ||||| || |||||| ||||| || Sbjct 14895 AATCCCCTCTTTATCTTGAATTTTCGCTTTCACGTTTTCGATGGTATCAGAGGGTTCCAC 14836 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || || || || || | ||||| || || |||||||| Sbjct 14835 CTCCAATGTGATGGTTTTACCGGTGAGAGTCTTGACGAAGATCTGCAT 14788 Score = 143 bits (158), Expect = 5e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 |||||||| ||||| || || || || ||||||||||| || || | | || ||||| Sbjct 13923 ACTAAGTGGAGAGTCGACTCCTTTTGAATATTATAATCGGACAGTGTACGTCCATCTTCG 13864 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 ||||||||||| || || || | || || ||||| || || || || || ||||||||| Sbjct 13863 AGTTGTTTTCCGGCGAAAATCAATCGCTGCTGATCGGGGGGAATACCCTCTTTATCTTGA 13804 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 || || || || ||||| ||||| ||||| | || || |||||||| || || || ||| Sbjct 13803 ATTTTGGCCTTAACATTCTCAATGGTATCGCTCGGCTCAACTTCCAATGTAATGGTTTTG 13744 Query 82782 CCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || | ||||| || || || ||||| Sbjct 13743 CCGGTGAGAGTCTTGACGAAGATTTGCAT 13715 Score = 138 bits (152), Expect = 2e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 |||||||| ||||| || || || || ||||||||||| || || | | || ||||| Sbjct 14768 ACTAAGTGGAGAGTCGACTCCTTTTGGATATTATAATCGGACAGTGTACGTCCATCTTCG 14709 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 |||||||| || || || || | || || ||||| || || || || || || |||||| Sbjct 14708 AGTTGTTTCCCGGCGAAAATCAATCGCTGCTGATCGGGGGGAATACCCTCTTTGTCTTGA 14649 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 || || || ||||||||||| || ||||| | ||||| |||||||| || || || || Sbjct 14648 ATTTTGGCCTTTACATTTTCGATGGTATCGCTCGGTTCAACTTCCAATGTAATGGTTTTA 14589 Query 82782 CCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || | || || ||||| || ||||| Sbjct 14588 CCGGTGAGTGTTTTGACAAAGATTTGCAT 14560 Score = 131 bits (144), Expect = 3e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 ||||| || || || ||||| || |||||||| ||||| ||||| ||| | | ||| Sbjct 14385 CGCAGTACCAAATGGAGAGTCGACTCTTTCTGAATATTGTAATCGCTGAGAGTCCGTCCG 14326 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || | |||||| || ||||| || | | || ||||| || || ||||| || || Sbjct 14325 TCCTCCAATTGTTTCCCCGCAAAAATCAACCGCTGCTGATCGGGGGGAATTCCCTCTTTG 14266 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 ||||||||||| || || || ||||| || |||||| ||||| || ||||| || || Sbjct 14265 TCTTGAATCTTAGCCTTAACGTTTTCGATAGTATCAGACGGTTCCACCTCCAATGTGATG 14206 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || | ||||| || || || ||||| Sbjct 14205 GTCTTTCCGGTGAGTGTCTTGACGAAGATTTGCAT 14171 >seq17817 Length=30685 Score = 163 bits (180), Expect = 6e-35 Identities = 157/200 (79%), Gaps = 1/200 (1%) Strand=Plus/Minus Query 82621 CTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGA 82680 |||| |||||||||||||| || ||| | | |||||||| | |||||| || ||||| | Sbjct 813 CTTTTTGTATATTATAATCGGAAAGAGTCCGTCCGTCTTCCAATTGTTTCCCCGCAAAAA 754 Query 82681 TTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTT 82740 | ||||| |||||||| || || || ||||| || || || ||||| ||||||||||| | Sbjct 753 TGAGTCTCTGTTGATCCGGGGGAATCCCTTCTTTGTCCTGTATCTTCGCTTTTACATTCT 694 Query 82741 CAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAA 82800 | ||||||||| | ||||| || || || || || ||||| || || || || || |||| Sbjct 693 CTATCGTATCACTCGGTTCGACCTCTAATGTAATGGTCTTTCCCGTTAATGTTTTCACAA 634 Query 82801 ATATCTGCATTATT-ATATT 82819 | || |||||| || ||||| Sbjct 633 AGATTTGCATTTTTAATATT 614 >seq14450 Length=5806 Score = 161 bits (178), Expect = 2e-34 Identities = 157/202 (78%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 82621 CTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGA 82680 |||| ||||||||||||||| ||| | | |||||||| | |||||| || || || | Sbjct 5279 CTTTTTGTATATTATAATCACTCAGAGTCCGTCCGTCTTCCAATTGTTTCCCCGCGAAAA 5338 Query 82681 TTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTT 82740 | ||||| |||||||| || || ||||| || ||||| || ||||| || || ||||| | Sbjct 5339 TGAGTCTCTGTTGATCCGGGGGAATTCCCTCTTTATCCTGTATCTTCGCCTTAACATTCT 5398 Query 82741 CAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAA 82800 |||| |||||| ||||| ||||||||||| || ||||| || || || ||||| || | Sbjct 5399 CAATGGTATCAGACGGTTCCACTTCCAAAGTGATGGTCTTTCCCGTTAATGTCTTAACGA 5458 Query 82801 ATATCTGCATTATTATATTTTT 82822 | || |||||| | ||||||| Sbjct 5459 AAATTTGCATTTTCGTATTTTT 5480 >seq32426 Length=2656 Score = 159 bits (176), Expect = 7e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 |||||| | || ||||| || | ||| ||||| ||||| || || ||||| || || || Sbjct 206 ACCTCCGCGCAGACGCAAGACGAGGTGAAGAGTCGATTCCTTTTGAATATTGTAGTCCGA 265 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 ||| | | ||||| || | ||||||||| |||||||| || | |||||||| ||||| Sbjct 266 GAGAGTACGGCCGTCCTCCAATTGTTTTCCGGCAAAGATCAGACGCTGTTGATCCGGAGG 325 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || || || ||||||||||| || ||||| ||||| ||||| || || ||||| || Sbjct 326 AATCCCCTCTTTATCTTGAATTTTGGCTTTGACATTCTCAATGGTGTCTGAGGGTTCCAC 385 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||||| || || ||||| | | || || || ||||| ||||| Sbjct 386 TTCCAAAGTGATAGTTTTGCCGATGAGTGTTTTCACGAATATTTGCAT 433 Score = 113 bits (124), Expect = 9e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 |||||||| ||||| || || || || |||||||||| || || | | || ||||| Sbjct 452 ACTAAGTGGAGAGTCGACTCCTTTTGAATATTATAATTGGACAGTGTACGTCCATCTTCG 511 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 |||||||| || | ||||| | || || ||||| ||||| || || || || || || Sbjct 512 AGTTGTTTCCCGGAGAAGATCAATCGCTGCTGATCGGGAGGAATACCCTCTTTGTCCTGT 571 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 || || || ||||||||||| || ||||| | || || |||||||| || || | || Sbjct 572 ATTTTGGCCTTTACATTTTCGATGGTATCGCTCGGCTCAACTTCCAATGTAATAGCTTTA 631 Query 82782 CCTGTCAACGTCTTTACAAATATCTGCATTATTAT 82816 || || | || || | || || ||||||| || Sbjct 632 CCGGTGAGTGTTTTGAAAAGGATTGGCATTATCAT 666 >seq21020 Length=2817 Score = 125 bits (138), Expect = 1e-23 Identities = 144/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 ||||| || ||||| || | |||||| ||||||||||| || ||| | | | || || Sbjct 2623 ACTAAATGGAGAGTCGACTTTTTCTGAATATTATAATCGGAAAGAGTCCATCTGTTCTCC 2682 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 | ||||| ||| | ||| | ||| | |||||||| || || || ||||| || || || Sbjct 2683 AATTGTTCCCCATCGAAGGTGAGTTTCTGTTGATCCGGGGGAATCCCTTCTTTGTCCTGT 2742 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 ||||| || ||||||||| | |||||||| ||| | ||||||||||| ||||| || Sbjct 2743 ATCTTCGCCTTTACATTTCCGATCGTATCCGACGGTACAACTTCCAAAGTGATCGTTTTA 2802 Query 82782 CCTGTCAACGTCTT 82795 || || || || || Sbjct 2803 CCGGTTAATGTTTT 2816 >seq68991 Length=328 Score = 86.0 bits (94), Expect = 1e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 || || || || || || || || || || ||||||||| || | | || ||||| Sbjct 191 ACCAAATGAAGTGTCGACTCCTTTTGAATGTTATAATCACTGAGTGTACGTCCATCTTCC 250 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 | |||||| || |||||||| || | |||||||| || || || || || ||||||||| Sbjct 251 AATTGTTTCCCGGCAAAGATCAGACGCTGTTGATCCGGGGGAATACCCTCTTTATCTTGA 310 Query 82722 ATCTTTGCTTTTACATT 82738 || || ||||| ||||| Sbjct 311 ATTTTAGCTTTGACATT 327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 980060399192211