Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_024451.1 Length=220222 Score E Sequences producing significant alignments: (Bits) Value seq12160 129 8e-25 >seq12160 Length=5517 Score = 129 bits (142), Expect = 8e-25 Identities = 278/410 (68%), Gaps = 12/410 (3%) Strand=Plus/Plus Query 140346 TATGTTATAGAAAAGAAAAAGTTAACTCAAAGCGAGGCGATGACAATTTTCTTTAAAGTT 140405 |||||||| || ||||||| ||| | |||| || ||||| || || | | | || Sbjct 3838 TATGTTATTAAAGAGAAAAAATTACCGGAAAGAGAAGCGATACGTATATTTTATGATGTC 3897 Query 140406 GCTAAGATTGTTTTGTCGCTACACACAAA--TAATATTGTTCACCGAGACATTAAACTCG 140463 | ||||| | | ||| | | ||| ||| ||||||||| || || ||| | ||| | | Sbjct 3898 G-TAAGAGTCGTGTGT-GATTTACATAAACGTAATATTGTACATCGTGACCTGAAATTAG 3955 Query 140464 GAAACATC--ATTTATGACACAAAGT--TAAAAACTAGTAAACTATCTAATTTTTGTTTA 140519 |||| || ||||| | || | || | | || || || |||||||| | Sbjct 3956 GAAATATGGTATTTAATAAACGTACGCGTAGAGTCACGTTAATTA----ATTTTTGTCTC 4011 Query 140520 GGAAAACACCTTTCAAGTGAAAACGATCTTTTAAAAGATCAACGCGGGTCTCCCGCATAT 140579 || ||||| | |||||||| || ||||||| ||||| | || || ||||||||| Sbjct 4012 GGGAAACATTTACTCAGTGAAAATGACCTTTTAACTGATCAGAGAGGTTCACCCGCATAT 4071 Query 140580 ATTTCTCCGGATGTTATCAGCGGTAAACCATATTTAGGTAAACCGTCTGATATGTGGGCG 140639 || ||| ||||| ||| ||| ||||| |||||||| ||||| || || ||||| Sbjct 4072 ATAAGTCCCGATGTACTCAACGGGAAACCGTATTTAGGGAAACCATCGGACTGTTGGGCT 4131 Query 140640 CTTGGAGTAACATTGTATACCATGTTGTTTGGGCAATTTCCATTTTATGATGCGTCTCCA 140699 | || || ||| ||| ||| ||| || ||||| ||||||||||| | |||| Sbjct 4132 TTAGGGGTTGTGCTGTTTACGATGCTGTACGGTCAATTCCCATTTTATGACTCAATTCCA 4191 Query 140700 ACAGAGCTCTTTAGAAAAATAAAGTCAGGCGTATTTACAATACCAACAGA 140749 ||| | ||| |||| || || |||| | || ||||||||| | ||| Sbjct 4192 CAAGAATTGTTTCGAAAGATTAAATCAGCTGAATATACAATACCCAAAGA 4241 Score = 104 bits (114), Expect = 3e-17 Identities = 126/172 (73%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 127421 GAACAGCGAGGATCACCGGCATACATCTCCCCAGAAGTTATATCAGGTAAAAAATATTTA 127480 || ||| |||| ||||| ||||| || || || || | || ||| |||||| Sbjct 4048 GATCAGAGAGGTTCACCCGCATATATAAGTCCCGATGTACTCAACGGGAAACCGTATTTA 4107 Query 127481 GCAAAACCGTCAGATGTTTGGGCTATAGGAGTTATTTTTTATACAATGCTTTACGGACAA 127540 | ||||| || || ||||||| |||| ||| | | | ||| ||||| ||||| ||| Sbjct 4108 GGGAAACCATCGGACTGTTGGGCTTTAGGGGTTGTGCTGTTTACGATGCTGTACGGTCAA 4167 Query 127541 TTTCCATTTTATGACTCTAAACCAAAAGAATTGTTTAGAAAAATTAAAGCAG 127592 || |||||||||||||| | ||| ||||||||||| |||| |||||| ||| Sbjct 4168 TTCCCATTTTATGACTCAATTCCACAAGAATTGTTTCGAAAGATTAAATCAG 4219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 703345426331280