Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq21107 111 2e-19 seq8365 109 5e-19 >seq21107 Length=15695 Score = 111 bits (122), Expect = 2e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||| | || ||||||||||| ||||||||||||| | || |||||| | Sbjct 14148 AAATGGAGAGTCGACTCTTTCTGAATATTGTAATCGCTGAGAGTCCGTCCGTCCTCCAAT 14089 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 || || |||||| |||| || | ||| || || || || || || || || || ||| Sbjct 14088 TGTTTTCCCGCGAAAATAAGTCTCTGTTGATCCGGGGGAATTCCCTCTTTATCCTGAATC 14029 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||| | | ||||| || |||| ||| ||||| || | |||| |||||||||| Sbjct 14028 TTGGCCTTAACATTCTCAATGGTATCGGAGGGTTCCACTTCCAAAGTGATGGTTTTGCCG 13969 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 || ||||| || ||||| |||||||| Sbjct 13968 GTGAGAGTCTTAACGAAGATCTGCAT 13943 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/200 (72%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGAGCTGCTTGC 133521 || ||||| || || ||||| |||||| || ||| ||| || ||||| || || | Sbjct 13911 GTCGACTCCTTTTGAATATTATAATCGGACA--GTGTACGTCCATCTTCGAGTTGTTTTC 13854 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| |||| | |||||||| ||||| || || || || || || ||| ||| || Sbjct 13853 CGGCGAAAATCAATCGCTGCTGATCGGGGGGAATACCCTCTTTATCT-TGAATTTTGGCC 13795 Query 133582 TGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 | | | | ||||| || ||| | ||||| || || | || | |||||||||||| ||| Sbjct 13794 TTAACATTCTCAATGGTATCGCTCGGCTCAACTTCCAATGTAATGGTTTTGCCGGTGAGA 13735 Query 133641 GTTTTTACGAAAATCTGCAT 133660 || || ||||| || ||||| Sbjct 13734 GTCTTGACGAAGATTTGCAT 13715 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||| | || ||||||||||| ||||||||||||| | || |||||| | Sbjct 14376 AAATGGAGAGTCGACTCTTTCTGAATATTGTAATCGCTGAGAGTCCGTCCGTCCTCCAAT 14317 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 || || ||||| |||| | ||||||||| ||||| || || || || ||||| ||| Sbjct 14316 TGTTTCCCCGCAAAAATCAACCGCTGCTGATCGGGGGGAATTCCCTCTTTGTCTTGAATC 14257 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||| | | || | || || | || ||||| || | |||| ||| || ||| Sbjct 14256 TTAGCCTTAACGTTTTCGATAGTATCAGACGGTTCCACCTCCAATGTGATGGTCTTTCCG 14197 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || || ||||| || ||||| Sbjct 14196 GTGAGTGTCTTGACGAAGATTTGCAT 14171 >seq8365 Length=5311 Score = 109 bits (120), Expect = 5e-19 Identities = 1108/1780 (62%), Gaps = 61/1780 (3%) Strand=Plus/Plus Query 147939 GCAGCGGGTTGAGTGCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAG 147998 || ||||||| || |||| ||||||||| |||||||| | |||| ||| ||| Sbjct 636 GCCGCGGGTTTCGTACGCAAATAGTACATCCCCGTCTTTAACCCCAATTTCCAGCCGTGA 695 Query 147999 TCGTGCACCGACGACATGAGCGTGTACGTCG--GGTGCGGC-ACAAACAGATTAAACGAC 148055 ||||| ||| | ||| | | | | | ||||| || | | | |||| ||| Sbjct 696 AAGTGCATCGATG---TGATCTTTGCCATTGTGGGTGCTGCGATATGAATGTTAAGCGAT 752 Query 148056 TGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGT---CGCTTT-AT 148111 ||||| ||||||||||| || || || || || | ||||||||| | | |||| | || Sbjct 753 TGGCTTTGGTCAATGAAAGCCCCGCGATCGGCAGACATTTCAATAACTGTACGCTGTGAT 812 Query 148112 CTTCATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCG 148171 || ||||| | || |||||||| ||| | || | |||||| || || || Sbjct 813 ATT----TCCCATACTGTTTTGTACAGTTCCTTCAAATCCTGGGGAATTCCCTCAATCAA 868 Query 148172 CTGCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAG 148231 || | ||| ||| | | | || || | ||| | | || | | || | | Sbjct 869 TTGAATCGATCCGTGATTAGAAATTATTTCATTCTTAAGATTATCATTCCAAAGTTCACG 928 Query 148232 CTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCG 148291 || ||| || | |||| ||||| || | ||||| || |||| | || | Sbjct 929 TTCAGTCAAATCTCTCAAAAGATGATGATTAACGATTTGAAATTCTCCGGACAAAACTCT 988 Query 148292 CCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGC 148351 || ||| | || |||||| ||| ||||| |||||||| || ||||||||||| || Sbjct 989 TCGTGAATATATATTACTCGTATACGCTTCAACAGACTCGTTATTTCCCAAAATCTGTGC 1048 Query 148352 GGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTAT 148411 |||| |||||| ||||| |||| || ||| ||| | | ||| | |||| || Sbjct 1049 TGTCGATGCCGTCGGCATCGGTGCTAACAACAGACTGTTCCTGAGTCCGTGCATTTTGAT 1108 Query 148412 TTTGCGCTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTA 148471 || |||||| | | ||| | ||| || | ||||||| ||||||||||| || Sbjct 1109 CTTTTCCTTCAGTTCAGTCCAATTCCATAGGTCTGTCGGTGTCTTATTCCACATGTCATA 1168 Query 148472 CTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGC 148531 |||||| || || ||||| ||||| || || ||| || || | | Sbjct 1169 CTGCAGTATCCCTTTAGAGGCGGGAGAACCCTCATATGACTCGTAAGGACCATACTGTTG 1228 Query 148532 CGCCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTT 148591 |||| ||| || |||| ||||| || ||| | || | ||||| ||||| | || Sbjct 1229 TGCCAATTCACAACTCGATTCGAGAGCCCCGAAATATAATGTCTCAAATATTTGAATATT 1288 Query 148592 GAGCAGCGCCGCCGACTCG---CTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGGC 148648 ||| | ||| ||| || || |||| ||||| | | ||||| ||||| Sbjct 1289 GAGACGTTTCGC---TTCGGGACTCTCAAACGGGTAACGCATGAGAATGAACGCATCGGC 1345 Query 148649 AAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTC 148708 | ||||| || || | |||||| || |||| | | |||||| | || || Sbjct 1346 TAATCCCTGAACTCCAATGCCAATCGGACGGTTCCTTTTATTGGAGCGTTCCG-TTTCAG 1404 Query 148709 GAGC-GGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTG--- 148764 || | ||||| | || ||||| ||||| | | || || | || || | Sbjct 1405 GAACGGGATAATAATTAATATCGATAATCTTATTTAAGTTTCGGGTAATGACTTTAGCGA 1464 Query 148765 --TAATTCTGCGCAGC-AATTCAAAATCGTAC---TTGTCATCTACGATGCATCGGTTCA 148818 | || || || || ||||| || | || | | | ||| | | || || | Sbjct 1465 CATCCTTGAGCTTTGCGAAGTCAAA--GGTGCGGGTTTTGGTGT-CGACGAACCGATTGA 1521 Query 148819 CGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTG--TACTCTACGAT 148876 |||| || || | ||| |||||||| | || || ||| | || || || ||||| Sbjct 1522 GTGCGACTGAAGCCAAATTACACACGGCAATTTCGTC--GGGAGATGAATATTCAACGAT 1579 Query 148877 CTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTT 148936 || | ||| ||||| |||||| || || | || | ||||||| ||| | ||| Sbjct 1580 TTCAGTGCATAGATTTGAGCATTTAATGGTTCCGAGATTTTGTTGATTGGACTTTCGGTT 1639 Query 148937 GCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATG-- 148994 ||| ||| || || | |||||||||| ||| || || | ||| | || || ||| Sbjct 1640 GCAATGGTCTTTATAAACCATGTACGGTGTGCCCGTCTCGATCTGAGCCTCGACAATGGC 1699 Query 148995 AACCGATGCAGGTCCTGCGCGCGCACTTGCTGCTCGTA--GCGACCCTCCTGCTCGTATA 149052 | | | || ||| || || || || | | ||| | ||| | |||||| Sbjct 1700 ATACCA--CAATGACTGAGCCCGAACCTGACGTTTGTATTTCTTTTCTCTT--TCGTATT 1755 Query 149053 AAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCG 149112 ||| | ||| ||||||| || | || | | ||| ||||| | ||| | Sbjct 1756 TCTCATATAAATCCTCAAACGCCTGACCCCACGTGTCATGTAAACCCGGGCATTCGTGTG 1815 Query 149113 GGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCC 149172 | ||||| | ||||| | || || | | || || ||||| |||| |||||| | || Sbjct 1816 GACACATCAATGACCATATCCCATCGGATTCAACACGTTTCATGAACAAATCGGGAATCC 1875 Query 149173 AGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGT 149232 | || | || | | ||| || || || || | ||| |||| | |||| Sbjct 1876 AAAGGCCATAGAACAAGTCACGTGCACGTATTTCCTCAGAACCCGTGTTCTTCCTAAGGT 1935 Query 149233 TGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGC 149292 ||| | ||||| || || |||||||| || ||||| || |||| ||||| | Sbjct 1936 CGAGGAATTCGAATACATCGGCATGCCACGGTTCGATGTAAACTGCGAAAGCGCCGGGAC 1995 Query 149293 GCTTG---CCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTT 149349 | ||| || ||||| ||||||| || | | ||||| ||||| || | ||| || Sbjct 1996 GTTTGTTCCCCCCCTGATCGACGTATCGGGCAGTATTGTTGAACACGCGCAACATCGGGA 2055 Query 149350 CAATGCCACTGGCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTT-TG 149408 | | ||| | | |||| || ||| ||| | ||| | | || ||| || Sbjct 2056 CCAATCCATTTGATATGCCATTCGTACCCGCAATATAAGTGC----CCTTAGCCCTTATG 2111 Query 149409 ---TGCACGTTGACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGC 149465 || || || | ||||| || ||| | || || ||| | ||||| | ||| Sbjct 2112 CAATGAACATTTATTCCGATACCACCGGCAGCTTTCGATATGACAGCGCATTGTTTGAGT 2171 Query 149466 GTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATT 149525 || ||| || ||||| || ||||| |||||||||| | || || | ||| | Sbjct 2172 GTGTCGTAAATCCCCTCAATACTGTCATCTTTCATGGTCAATAAGAAACAACTGGACAAT 2231 Query 149526 TGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGG 149585 || || | || ||||| ||||| || || || || ||||| || | | Sbjct 2232 TGTGGGTGCGGAGTTCCGGCATTGAACAGTGTCGGTGATGCATGAGTAAACCATCGTTCG 2291 Query 149586 CTCATCATCTCGTACGACTCGA--GCACGCGGTCCATGTCATCGCCATGGATGCCTATGG 149643 ||| | | |||| ||| | ||| || ||| ||||||| || || || || | | Sbjct 2292 GACATGAGATTATACGTCTCAATGGCA-GC-GTCAATGTCATTTCCGTGTATCCCCACAG 2349 Query 149644 CGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTT 149683 |||| ||||| ||||| ||||||||||| ||||| ||||| Sbjct 2350 CGACACGCATGAGCATGTGCTGCGGTCGTTCCGCGACTTT 2389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482572100400760