Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq8365 138 3e-27 >seq8365 Length=5311 Score = 138 bits (152), Expect = 3e-27 Identities = 415/633 (66%), Gaps = 11/633 (2%) Strand=Plus/Minus Query 110304 TATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATT 110363 ||||| ||||||||||| ||||| || | |||||| || ||||| | | || Sbjct 2440 TATTTCGGTTTCAAAACACTTGAGCGGTCATATTTAATTAAGATCAATAGGAAAGTCGCG 2381 Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423 ||||| || || |||||| | | ||||| || | || || || ||| |||| ||| | Sbjct 2380 GAACGACCGCAGCACATGCTCATGCGTGTCGCTGTGGGGATACACGGAAATGACATTGAC 2321 Query 110424 GCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTAT--TCATGCTACTCCTA 110481 |||| ||||| ||| || | | || || | | | | |||||| | || | Sbjct 2320 GCTGCCATTGAGACGTATAATCTCAT--GTCCGAACGATGGTTTACTCATGCATCACCGA 2263 Query 110482 CCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGA-ATT 110540 | || || || || |||||| ||||||| | ||| |||||| | | || Sbjct 2262 CACTGTTCAATGCCGGAACTCCGCACCCACAATTGTCCAGTTG-TTTCTTATTGACCATG 2204 Query 110541 AACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAA 110600 || ||||| |||||| || ||||| || | || ||| || ||| | || || ||| Sbjct 2203 AAAGATGACAGTATTGAGGGGATTTACGACACACTCAAACAATGCGCTGTCATATCGAAA 2144 Query 110601 AACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCA 110660 | || || || || || | |||||| || | | || || | |||| || Sbjct 2143 GCTGCCGGTGGTATCGGAATAAATGTTCATTGCATAAGGGCTAAGGGCACTTATATTGCG 2084 Query 110661 ACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCA 110720 |||| || |||| |||| | || || ||||| | || |||||| | ||||| Sbjct 2083 GGTACGAATGGCATATCAAATGGATTGGTCCCGATGTTGCGCGTGTTCAACAATACTGCC 2024 Query 110721 AAATATGTGAATCAAGGTGGTAAGAGAAAT---GGCTCATTTGCTATCTATCTCGAACCT 110777 ||| || |||| || || || | | | ||| | || || | || ||||||| Sbjct 2023 CGATACGTCGATCAGGGGGGGAACAAACGTCCCGGCGCTTTCGCAGTTTACATCGAACCG 1964 Query 110778 TGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATT-TGAAGAACA 110836 |||||| | ||| |||| |||||| | || ||| | || || || || || ||| ||| Sbjct 1963 TGGCATGCCGATGTATTCGAATTCCTCGACCTTAGGAAGAA-CACGGGTTCTGAGGAAAT 1905 Query 110837 AAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCA 110896 | | |||||||| || || |||| | |||||| | ||||| ||||||||||||||| | Sbjct 1904 ACGTGCACGTGACTTGTTCTATGGCCTTTGGATTCCCGATTTGTTCATGAAACGTGTTGA 1845 Query 110897 AGAAAATGGCATGTGGTCTCTTATGTGTCCTCA 110929 | |||| || ||||| | |||||||| || Sbjct 1844 ATCCGATGGGATATGGTCATTGATGTGTCCACA 1812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1184677127028489