Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq21107 132 3e-26 seq68991 107 1e-18 seq17817 107 1e-18 seq32426 104 2e-17 >seq21107 Length=15695 Score = 132 bits (146), Expect = 3e-26 Identities = 161/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 |||||| || || || ||||| ||| ||||| || || |||||||| ||||| ||| | Sbjct 14775 ACGTAAGACTAAGTGGAGAGTCGACTCCTTTTGGATATTATAATCGGACAGTGTACGTCC 14716 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 || || | |||||| ||||| |||||||| ||||||||||| | || | ||| ||||| Sbjct 14715 ATCTTCGAGTTGTTTCCCGGCGAAAATCAATCGCTGCTGATCGGGGGGAATACCCTCTTT 14656 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712 ||| |||||| | | |||| || | ||| ||||| | ||| || || | || | Sbjct 14655 GTCTTGAATTTT-GGCCTTTACATTTTCGATGGTATCGCTCGGTTCAACTTCCAATGTAA 14597 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | |||||||| || | ||||| |||||||| ||||| Sbjct 14596 TGGTTTTACCGGTGAGTGTTTTGACAAAGATTTGCAT 14560 Score = 118 bits (130), Expect = 7e-22 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 |||||| || || || ||||| ||| ||||| || || |||||||| ||||| ||| | Sbjct 13930 ACGTAAGACTAAGTGGAGAGTCGACTCCTTTTGAATATTATAATCGGACAGTGTACGTCC 13871 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 || || | |||||||||||| |||||||| ||||||||||| | || | ||| ||||| Sbjct 13870 ATCTTCGAGTTGTTTTCCGGCGAAAATCAATCGCTGCTGATCGGGGGGAATACCCTCTTT 13811 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712 || |||||| | | ||||| || | ||| ||||| | || || || | || | Sbjct 13810 ATCTTGAATTTT-GGCCTTAACATTCTCAATGGTATCGCTCGGCTCAACTTCCAATGTAA 13752 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | ||||| || || | || || || ||||| ||||| Sbjct 13751 TGGTTTTGCCGGTGAGAGTCTTGACGAAGATTTGCAT 13715 Score = 114 bits (126), Expect = 8e-21 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||||||| ||||| |||||| || || || |||||||| || || ||| |||| ||| Sbjct 13695 ACCAAATGGAGAGTCGACTCTTTCTGAATATTATAATCGGAAAGAGTCCGTCCGTCTTCC 13636 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 |||||||| || || || || | | ||| ||||| | || | ||||||||||| Sbjct 13635 AATTGTTTCCCCGCGAAGATGAGTCTCTGTTGATCCGGGGGAATCCCTTCTTTGTCCTGT 13576 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || ||| | | |||| || | || || | |||||| || | ||||||||||| Sbjct 13575 ATCTTC-GCCTTTACATTTTCGATCGTATCCGACGGTTCCACTTCCAAAGTGATCGTTTT 13517 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| ||||| ||||| |||||||| ||||| Sbjct 13516 ACCGGTTAATGTTTTCACAAAGATTTGCAT 13487 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| || | || ||| || || | || ||||| || ||||| || || || || || Sbjct 15015 ACCTCCGCGCAGACGCAAGACGAGGTGAAGAGTCGATTCCTTTTGAATATTATAGTCCGA 14956 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || || |||| || ||||||||||||||||| |||| |||||||||||| | || Sbjct 14955 GAGAGTACGGCCGTCCTCTAATTGTTTTCCGGCAAAGATCAGACGCTGCTGATCCGGAGG 14896 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || ||||| || ||||||| |||| || | || | ||| || | ||||| Sbjct 14895 AATCCCCTCTTTATCTTGAATTTTCGCTTTC-ACGTTTTCGATGGTATCAGAGGGTTCCA 14837 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| |||||||| || | || || || ||||||||||| Sbjct 14836 CCTCCAATGTGATGGTTTTACCGGTGAGAGTCTTGACGAAGATCTGCAT 14788 Score = 109 bits (120), Expect = 4e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| || || | ||| || || ||||| ||||| |||||| || || ||||||||| Sbjct 14170 ACCTCCCCTGAGACGCAATACTAAATGGAGAGTCGACTCTTTCTGAATATTGTAATCGCT 14111 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || ||| |||| |||||||||||||| || ||||| | | ||| ||||| | || Sbjct 14110 GAGAGTCCGTCCGTCCTCCAATTGTTTTCCCGCGAAAATAAGTCTCTGTTGATCCGGGGG 14051 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || ||||| || ||| || | | ||||| || | ||| ||| | ||||| Sbjct 14050 AATTCCCTCTTTATCCTGAATCTT-GGCCTTAACATTCTCAATGGTATCGGAGGGTTCCA 13992 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| ||||| || || | || || || ||||||||||| Sbjct 13991 CTTCCAAAGTGATGGTTTTGCCGGTGAGAGTCTTAACGAAGATCTGCAT 13943 Score = 107 bits (118), Expect = 1e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||||||| ||||| |||||| || || ||||||||| ||| || ||| |||| ||| Sbjct 14379 ACCAAATGGAGAGTCGACTCTTTCTGAATATTGTAATCGCTGAGAGTCCGTCCGTCCTCC 14320 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 |||||||| || ||||||||||| ||||||||||| | || | || |||||||| | Sbjct 14319 AATTGTTTCCCCGCAAAAATCAACCGCTGCTGATCGGGGGGAATTCCCTCTTTGTCTTGA 14260 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || || | | ||| | || | || || | |||||| || | ||||| || || Sbjct 14259 ATCTT-AGCCTTAACGTTTTCGATAGTATCAGACGGTTCCACCTCCAATGTGATGGTCTT 14201 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || || | || || || ||||| |||||| Sbjct 14200 TCCGGTGAGTGTCTTGACGAAGATTTGCATA 14170 >seq68991 Length=328 Score = 107 bits (118), Expect = 1e-18 Identities = 103/132 (78%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||||||||||||||| || || ||| ||||| ||||| ||||| |||||| ||| | Sbjct 184 ACGTAACACCAAATGAAGTGTCGACTCCTTTTGAATGTTATAATCACTGAGTGTACGTCC 243 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 || ||||||||||| |||||||| |||| |||||| ||||| | || | ||| ||||| Sbjct 244 ATCTTCCAATTGTTTCCCGGCAAAGATCAGACGCTGTTGATCCGGGGGAATACCCTCTTT 303 Query 33654 GTCGGCAATTTT 33665 || |||||| Sbjct 304 ATCTTGAATTTT 315 Score = 91.5 bits (100), Expect = 1e-13 Identities = 123/169 (73%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 |||||| ||| | || |||||||||||||||||||| |||| |||||| ||||| | || Sbjct 4 GAGTGTACGTCCATCTTCCAATTGTTTTCCGGCAAAGATCAGACGCTGTTGATCCGGGGG 63 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||||| |||||| | || |||| || | || ||| | ||| | Sbjct 64 AATCCCTTCTTTGTCCTGTATTTTC-GCTTTGACATTTTCGATAGTATCGGAGGGTTCGA 122 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | || || |||||||| || | ||||| || || || ||||| Sbjct 123 CTTCCAATGTAATGGTTTTACCGGTGAGAGTTTTCACGAATATTTGCAT 171 >seq17817 Length=30685 Score = 107 bits (118), Expect = 1e-18 Identities = 140/191 (73%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 33560 CTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAA 33619 |||||||||| || |||||||| || || ||| |||| ||||||||||| || ||||||| Sbjct 813 CTTTTTGTATATTATAATCGGAAAGAGTCCGTCCGTCTTCCAATTGTTTCCCCGCAAAAA 754 Query 33620 TCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAG 33679 | | | ||| ||||| | || | ||||||||||| || ||| | || |||| Sbjct 753 TGAGTCTCTGTTGATCCGGGGGAATCCCTTCTTTGTCCTGTATCTTC-GCTTTTACATTC 695 Query 33680 TC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACA 33738 || | || || || | ||| || || | || || || || || ||||| ||||| ||| Sbjct 694 TCTATCGTATCACTCGGTTCGACCTCTAATGTAATGGTCTTTCCCGTTAATGTTTTCACA 635 Query 33739 AAGATCTGCAT 33749 ||||| ||||| Sbjct 634 AAGATTTGCAT 624 >seq32426 Length=2656 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| || | || ||| || || | || ||||| || ||||| || ||||| || || Sbjct 206 ACCTCCGCGCAGACGCAAGACGAGGTGAAGAGTCGATTCCTTTTGAATATTGTAGTCCGA 265 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || || |||| |||||||||||||||||||| |||| |||||| ||||| | || Sbjct 266 GAGAGTACGGCCGTCCTCCAATTGTTTTCCGGCAAAGATCAGACGCTGTTGATCCGGAGG 325 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || ||||| || |||||| | || |||| || | |||||| | ||||| Sbjct 326 AATCCCCTCTTTATCTTGAATTTT-GGCTTTGACATTCTCAATGGTGTCTGAGGGTTCCA 384 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| ||||| || | | ||||| || || || ||||| Sbjct 385 CTTCCAAAGTGATAGTTTTGCCGATGAGTGTTTTCACGAATATTTGCAT 433 Score = 96.9 bits (106), Expect = 2e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||||||||| || || ||||| ||| ||||| || || |||| ||| ||||| ||| | Sbjct 445 ACGTAACACTAAGTGGAGAGTCGACTCCTTTTGAATATTATAATTGGACAGTGTACGTCC 504 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 || || | |||||| |||| || ||||| ||||||||||| | || | ||| ||||| Sbjct 505 ATCTTCGAGTTGTTTCCCGGAGAAGATCAATCGCTGCTGATCGGGAGGAATACCCTCTTT 564 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712 ||| ||||| | | |||| || | ||| ||||| | || || || | || | Sbjct 565 GTCCTGTATTTT-GGCCTTTACATTTTCGATGGTATCGCTCGGCTCAACTTCCAATGTAA 623 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | | |||||| || | ||||| | || ||| |||| Sbjct 624 TAGCTTTACCGGTGAGTGTTTTGAAAAGGATTGGCAT 660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328141350070080