Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq21107 132 1e-25 seq32426 105 2e-17 seq14450 87.8 4e-12 seq68991 84.2 5e-11 >seq21107 Length=15695 Score = 132 bits (146), Expect = 1e-25 Identities = 159/214 (74%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 206159 AGGCTAAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAG 206218 |||| |||||| || || ||| ||||| | || || ||||||||||||||||||| Sbjct 13480 AGGC-AAAATG---CAAATCTTTGTGAAAACATTAACCGGTAAAACGATCACTTTGGAAG 13535 Query 206219 TGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTT 206278 ||||| || || || ||||| |||||| ||||| || || |||||||| ||| Sbjct 13536 TGGAACCGTCGGATACGATCGAAAATGTAAAGGCGAAGATACAGGACAAAGAAGGGATTC 13595 Query 206279 TGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGG 206338 ||||| || ||||| |||||||| || || || |||||||| ||| ||||| | Sbjct 13596 CCCCGGATCAACAGAGACTCATCTTCGCGGGGAAACAATTGGAAGACGGACGGACTCTTT 13655 Query 206339 CCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 ||||||| || | ||||||||||| ||||| || Sbjct 13656 CCGATTATAATATTCAGAAAGAGTCGACTCTCCA 13689 Score = 123 bits (136), Expect = 6e-23 Identities = 140/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || ||||| |||||||||||||||||| || || || | || Sbjct 13958 AAGACTCTCACCGGCAAAACCATCACTTTGGAAGTGGAACCCTCCGATACCATTGAGAAT 14017 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||||| || ||||| |||||| ||||| || |||||||| ||| Sbjct 14018 GTTAAGGCCAAGATTCAGGATAAAGAGGGAATTCCCCCGGATCAACAGAGACTTATTTTC 14077 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || ||||| || ||||| || ||| ||||| | ||||||||| | ||||||||||| Sbjct 14078 GCGGGAAAACAATTGGAGGACGGACGGACTCTCAGCGATTACAATATTCAGAAAGAGTCG 14137 Query 206365 ACTCTTCA 206372 ||||| || Sbjct 14138 ACTCTCCA 14145 Score = 107 bits (118), Expect = 5e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || ||||| ||||| || ||||| ||||| |||||| ||||| || ||||| Sbjct 14185 CAAGACACTCACCGGAAAGACCATCACATTGGAGGTGGAACCGTCTGATACTATCGAAAA 14244 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| ||||||||||| ||||| |||||| || || || | | || || Sbjct 14245 CGTTAAGGCTAAGATTCAAGACAAAGAGGGAATTCCCCCCGATCAGCAGCGGTTGATTTT 14304 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || || || || ||||| || ||| ||||| | ||||||||| | ||||||||||| Sbjct 14305 TGCGGGGAAACAATTGGAGGACGGACGGACTCTCAGCGATTACAATATTCAGAAAGAGTC 14364 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| || | || || ||||||| Sbjct 14365 GACTCTCCATTTGGTACTGCGACTTCG 14391 Score = 100 bits (110), Expect = 7e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| || ||||| ||||| ||||| |||||| ||||| Sbjct 14791 CAGATCTTCGTCAAGACTCTCACCGGTAAAACCATCACATTGGAGGTGGAACCCTCTGAT 14850 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || ||||| || ||||| ||| |||||||| ||||| || ||| ||||| || Sbjct 14851 ACCATCGAAAACGTGAAAGCGAAA-ATTCAAGATAAAGAGGGGATTCCTCCGGATCAGCA 14909 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | || ||||| |||||||| || || || || || | ||| | | || || || | Sbjct 14910 GCGTCTGATCTTTGCCGGAAAACAATTAGAGGACGGCCGTACTCTCTCGGACTATAATAT 14969 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || || || || ||||||||||| || ||| | || || Sbjct 14970 TCAAAAGGAATCGACTCTTCACCTCGTCTTGCGTCTGCG 15008 >seq32426 Length=2656 Score = 105 bits (116), Expect = 2e-17 Identities = 149/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| |||| || ||||| |||||||||||||||||| || ||||| | || Sbjct 418 AAAACACTCATCGGCAAAACTATCACTTTGGAAGTGGAACCCTCAGACACCATTGAGAAT 359 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||| |||||||| ||||| || ||| ||||| || | || ||||| Sbjct 358 GTCAAAGCCAAA-ATTCAAGATAAAGAGGGGATTCCTCCGGATCAACAGCGTCTGATCTT 300 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 |||||||| || ||||| || || | ||| | | || ||||| | || || || || Sbjct 299 TGCCGGAAAACAATTGGAGGACGGCCGTACTCTCTCGGACTACAATATTCAAAAGGAATC 240 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||||||| || ||| | || || Sbjct 239 GACTCTTCACCTCGTCTTGCGTCTGCG 213 >seq14450 Length=5806 Score = 87.8 bits (96), Expect = 4e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || ||||| || |||||||||||||||||| ||||| || | || || ||| Sbjct 5444 ACGGGAAAGACCATCACTTTGGAAGTGGAACCGTCTGATACCATTGAGAATGTTAAGGCG 5385 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || ||||| |||||| ||||| || ||||| || ||||| || || Sbjct 5384 AAGATACAGGATAAAGAGGGAATTCCCCCGGATCAACAGAGACTCATTTTCGCGGGGAAA 5325 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAG 206359 || |||||||| ||| ||||| || ||||| || | || |||| Sbjct 5324 CAATTGGAAGACGGACGGACTCTGAGTGATTATAATATACAAAAAG 5279 >seq68991 Length=328 Score = 84.2 bits (92), Expect = 5e-11 Identities = 107/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| || ||||| || || |||||||| ||| || || || ||||| Sbjct 156 AAAACTCTCACCGGTAAAACCATTACATTGGAAGTCGAACCCTCCGATACTATCGAAAAT 97 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||| || || || |||||||| ||| ||||| || | || ||||| Sbjct 96 GTCAAAGCGAAA-ATACAGGACAAAGAAGGGATTCCCCCGGATCAACAGCGTCTGATCTT 38 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGA 206328 |||||||| || |||||||||||| Sbjct 37 TGCCGGAAAACAATTGGAAGATGGA 13 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179694110146529