Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq8365 141 9e-29 seq68991 98.7 9e-16 seq32426 84.2 2e-11 >seq8365 Length=5311 Score = 141 bits (156), Expect = 9e-29 Identities = 1184/1888 (63%), Gaps = 61/1888 (3%) Strand=Plus/Plus Query 146551 ACAGTGAATTGTTGTGTGTGCGCCGCAGGTTTTGTGCGCAAATAATACATGCCCGTTTTG 146610 ||||||||||| | | ||||| ||||| || |||||||| ||||| ||||| || Sbjct 615 ACAGTGAATTGAATAGCATTTGCCGCGGGTTTCGTACGCAAATAGTACATCCCCGTCTTT 674 Query 146611 AGGCCACATCGCCACGAGTGATTGTGAATCGAAGTCATGATGGCGTACGTCGGCTCCGCC 146670 | || || ||| |||| ||| ||||| || || | || || || | || Sbjct 675 AACCCCAATTTCCAGCCGTGAAAGTGCATCGATGTGATCTTTGCCATTGTGGGTGCTGCG 734 Query 146671 ACGAAAAGATTAAACGATTGGCTTTGATCTATGAAAGCGTTGCGGTCGGCCGCCATCTCA 146730 | || |||| |||||||||||| || |||||||| ||| ||||| | ||| ||| Sbjct 735 ATATGAATGTTAAGCGATTGGCTTTGGTCAATGAAAGCCCCGCGATCGGCAGACATTTCA 794 Query 146731 ATCA-TGCGTTTTGTCTTCATTTCCCAAGCGGTTTTGTACAGCCCCTTAACGCTATCTGG 146789 || | || ||| | |||||||| | ||||||||||| |||| | | || Sbjct 795 ATAACTGTACGCTGTGAT-ATTTCCCATACTGTTTTGTACAGTTCCTTCAAATCCTGGGG 853 Query 146790 AATACCTTCAATGTTTTGAATAGAGCCCTTGTGCGCAAAAATAGTGTTTCGTATTTCGGG 146849 ||| || ||||| |||||| || || ||| | |||| | |||| | || | Sbjct 854 AATTCCCTCAATCAATTGAATCGATCC---GTGATTAGAAAT--TATTTCATTCTTAAGA 908 Query 146850 ----CGTGTAAAGGTTTA-GTTTAATGAGGTCA-TCAATTAAATACTGATTGACCACTTG 146903 | | || ||| | ||| | | | || |||| | || ||||| || | ||| Sbjct 909 TTATCATTCCAAAGTTCACGTTCAGTCAAATCTCTCAAA-AGATGATGATTAACGATTTG 967 Query 146904 AAACTCGCCCGCCAGCACACGTC-TGAGATACACATTGCTAGTGAAAGGCTCAAAAGACT 146962 ||| || || | || || | || ||| ||| | ||| || || | | |||| ||||| Sbjct 968 AAATTCTCCGGACAAAACTCTTCGTGA-ATATATATTACTCGTATACGCTTCAACAGACT 1026 Query 146963 CATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACCAACAATGAAT 147022 | ||||| || || || || || || | ||| || ||||| || | ||||| | Sbjct 1027 CGTTATTTCCCAAAATCTGTGCTGTCGATGCCGTCGGCATCGGTGCTAACAACAGACTGT 1086 Query 147023 TTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCA---CATCGACG 147079 | | || |||| | ||| || ||||||| ||| |||||| | ||| | Sbjct 1087 TCCTGAGTCCGTGCATTTTGATCTTTTCCTTCA--GTT---CAGTCCAATTCCATAGGTC 1141 Query 147080 AG--GGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGACTGCCAGC 147137 | || ||| ||||||||||| ||||| || | ||| | ||||||| || | Sbjct 1142 TGTCGGTGTCTTATTCCACATGTCATACTGCAGTATCCCTTTAGAGGCGGGAGAACCCTC 1201 Query 147138 GAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAATTCACAGCTTGCCTCGAGCGCTCCATA 147197 | | ||| || | | || ||||||||||| || | ||||| || || | Sbjct 1202 ATATGACTCGTAAGGACCATACTGTTGTGCCAATTCACAACTCGATTCGAGAGCCCCGAA 1261 Query 147198 GTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGT-CGCTTCTTCGCTCTCGTAAGGCA 147256 |||| || || ||||| | || || ||| | |||||| ||||| | || Sbjct 1262 ATATAATGTCTCAAATATTTGAATATTGAG-ACGTTTCGCTTCGGGACTCTCAAACGGGT 1320 Query 147257 TACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGGTCGATGCT 147316 ||||| || | || |||||||| || ||||| | || | ||| || || || | | Sbjct 1321 AACGCATGAGAATGAACGCATCGGCTAATCCCTGAACTCCAATGCCAATCGGACGGTTCC 1380 Query 147317 TTTCGTTGCTGCGCTTCGCGCTCGCTATGGGATAGTGGTTGCGATCAATAATCTTGTTGA 147376 ||| ||| ||| | || | | |||||| | || ||| |||||||| || | Sbjct 1381 TTTTATTGGAGCGTTCCGTTTCAGGAACGGGATAATAATTAATATCGATAATCTTATTTA 1440 Query 147377 GGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATAAGTCCCG-TCT 147435 ||| || | ||||||| | ||||| || |||| ||| | || | | | | Sbjct 1441 AGTTTCGGGTAATGACTTTAGCGACATCCTTGAGCTTTGCGAAGTCAAAGGTGCGGGTTT 1500 Query 147436 TCGACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACGGCCGTCTCTTCG 147495 | | || ||| | | || | |||| || |||| ||| || ||||| | || ||| Sbjct 1501 TGGTGTCG-ACGAACCGATTGAGTGCGACTGAAGCCAAATTACACACGGCAATTTCGTCG 1559 Query 147496 GCGTCGCTG--TACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAAT 147553 | | || || | |||||||| | ||| || || |||||| ||| ||| | || Sbjct 1560 GGA--GATGAATATTCAACGATTTCAGTGCATAGATTTGAGCATTTAATGGTTCCGAGAT 1617 Query 147554 TTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCT 147613 |||| |||||| || || ||||| |||||| | | |||||||||| ||| |||| Sbjct 1618 TTTGTTGATTGGACTTTCGGTTGCAATGGTCTTTATAAACCATGTACGGTGTGCCCGTCT 1677 Query 147614 CGACTTGCGTTTCAACGAT---AAACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGAT 147670 ||| || | || || || | ||| || ||| || || ||| || || | Sbjct 1678 CGATCTGAGCCTCGACAATGGCATACCA---CAATGACTGAGCCCGAACC---TGACGTT 1731 Query 147671 AGCGGCCCTCGT---TTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGTAGCAAT 147727 | || | ||||||| ||| || || ||||||| | | || | | Sbjct 1732 TGTATTTCTTTTCTCTTTCGTATTTCTCATATAAATCCTCAAACGCCTGACCCCACGTGT 1791 Query 147728 CG-GCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCGCGTTAACG 147786 | | || ||||| || | || |||||||||| ||||| || | || | | ||| Sbjct 1792 CATGTAAACCCGGG-CATTCGTGTGGACACATCAATGACCATATCCCATCGGATTCAACA 1850 Query 147787 CGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCGCTTTGCAATCC 147846 ||| ||| |||| ||| || | ||| || | || | | || || || ||| Sbjct 1851 CGTTTCATGAACAAATCGGGAATCCAAAGGCCATAGAACAAGTCACGTGCACGTATTTCC 1910 Query 147847 TCGGCGCCCATGTTGCGTTTCAAA--TTAAGCA---CGCTATAGATGTCGGCGTGCCAGG 147901 || | ||| |||| || | || | || | || ||| || |||| ||||| | Sbjct 1911 TCAGAACCCGTGTTC--TTCCTAAGGTCGAGGAATTCGA-ATACAT--CGGCATGCCACG 1965 Query 147902 GTTCAATGTAGACGGCCAGCGCACCTTTACGCTTT---CCGCCCTGGTCGACATGGCGCA 147958 |||| ||||| || || | || || ||| || || ||||| ||||| | || Sbjct 1966 GTTCGATGTAAACTGCGAAAGCGCCGGGACGTTTGTTCCCCCCCTGATCGACGTATCGGG 2025 Query 147959 CCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGTGGAAT 148018 | | ||||| |||||||||| ||| || ||| || | | |||| || || Sbjct 2026 CAGTATTGTTGAACACGCGCAACATCGGGACCAATCCATTTGATATGCCATTCGTACCCG 2085 Query 148019 TGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCGCCGCCGTACT 148078 || | |||| || | | || || || | || || || ||| | | Sbjct 2086 CAATATAAGTGCCCTTAGCCCTTATGCAATGAACATTTATTCCGATACCACCGGCAGCTT 2145 Query 148079 TTGATATGGCAGCGCAATCGCCCAATGTCGTGTAGATGCCGTCGATGCTGTCGTTTTTGA 148138 | |||||| ||||||| | | ||| ||| || || || || ||||| | ||| | Sbjct 2146 TCGATATGACAGCGCATTGTTTGAGTGTGTCGTAAATCCCCTCAATACTGTCATCTTTCA 2205 Query 148139 CGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTTCCCGCCGAGAAAAGGGTGG 148198 | | || ||||| ||| ||| || | | ||||| || ||| || || | Sbjct 2206 TGGTCAATAAGAAACAACTGGACAATTGTGGGTGCGGAGTTCCGGCATTGAACAGTGTCG 2265 Query 148199 GACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGATACGTCTCAATAGCGTCTTCGA 148258 | || || |||||| || || ||| | |||||||||||| || | || | Sbjct 2266 GTGATGCATGAGTAAACCATCGTTCGGACATGAGATTATACGTCTCAATGGCAGCGTCAA 2325 Query 148259 TGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGGTCGTTCGGCAA 148318 |||| | ||||| || |||| ||||| ||||||||||||||||| |||||||| || | Sbjct 2326 TGTCATTTCCGTGTATCCCCACAGCGACACGCATGAGCATGTGCTGCGGTCGTTCCGCGA 2385 Query 148319 CTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTAACCAAAGTACTTGT 148378 ||| | |||||||| | | |||| || || |||||| |||| || || |||| Sbjct 2386 CTTTCCTATTGATCTTAATTAAATATGACCGCTCAAGTGTTTTGAAACCGAAATAATTGT 2445 Query 148379 AATCAAAATCTAGCTCGTAAGCGATGGC 148406 ||| | |||| | || ||| |||||| Sbjct 2446 AATGATAATCGCGATCATAAATGATGGC 2473 >seq68991 Length=328 Score = 98.7 bits (108), Expect = 9e-16 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 131960 GTACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATG 132019 ||||| |||||| | ||||| |||| | |||| |||||||||||||| || || || Sbjct 8 GTACGTCCATCTTCCAATTGTTTTCCGGCAAAGATCAGACGCTGTTGATCCGGGGGAATC 67 Query 132020 CCTTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCG 132079 |||||||| || ||||| ||| | | ||| | |||||||| || || ||||| Sbjct 68 CCTTCTTTGTCCTGTATTTTCGCTTTGACATTTTCGATAGTATCGGAGGGTTCGACTTCC 127 Query 132080 ACCGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | || | |||||||| || |||||||| | ||| || ||||| Sbjct 128 AATGTAATGGTTTTACCGGTGAGAGTTTTCACGAATATTTGCAT 171 Score = 93.3 bits (102), Expect = 4e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 || || |||||||| | | ||||| ||||||||||| || || || | ||||| | Sbjct 185 CGTAACACCAAATGAAGTGTCGACTCCTTTTGAATGTTATAATCACTGAGTGTACGTCCA 244 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| | ||||| |||| | |||| |||||||||||||| || || || || |||||| Sbjct 245 TCTTCCAATTGTTTCCCGGCAAAGATCAGACGCTGTTGATCCGGGGGAATACCCTCTTTA 304 Query 132029 TCGGTAATTTT 132039 || |||||| Sbjct 305 TCTTGAATTTT 315 >seq32426 Length=2656 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || |||||||| |||||||| | ||||| || || | ||||| |||| | Sbjct 240 GATTCCTTTTGAATATTGTAGTCCGAGAGAGTACGGCCGTCCTCCAATTGTTTTCCGGCA 299 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||||||||| ||||| || || |||||||| |||||| ||| | Sbjct 300 AAGATCAGACGCTGTTGATCCGGAGGAATCCCCTCTTTATCTTGAATTTTGGCTTTGACA 359 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | || |||||||| | || | ||||| || | || ||||| Sbjct 360 TTCTCAATGGTGTCTGAGGGTTCCACTTCCAAAGTGATAGTTTTGCCGATGAGTGTTTTC 419 Query 132110 ATGAAAATCTGCAT 132123 | ||| || ||||| Sbjct 420 ACGAATATTTGCAT 433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475774455419640