Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq21107 131 1e-25 seq32426 104 2e-17 seq17817 96.9 3e-15 seq14450 96.9 3e-15 >seq21107 Length=15695 Score = 131 bits (144), Expect = 1e-25 Identities = 159/215 (74%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| |||||| | ||||| ||| | || || | ||||| ||| | | | Sbjct 14560 ATGCAAATCTTTGTCAAAACACTCACCGGTAAAACCATTACATTGGAAGTTGAACCGAGC 14619 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| ||||| | ||||| |||||| || ||||||||||| || ||||||||| Sbjct 14620 GATACCATCGAAAATGTAAAGGCCAAAATTCAAGACAAAGAGGGTATTCCCCCCGATCAG 14679 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG--AAATGTCAGCGATTACA 25352 || || | |||| || ||| |||||||||||||||| | | |||| |||||| | Sbjct 14680 CAGCGATTGATTTTCGCCGGGAAACAACTCGAAGATGGACGTACACTGTC--CGATTATA 14737 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTA 25387 |||| ||||| || || || | || ||||| ||| Sbjct 14738 ATATCCAAAAGGAGTCGACTCTCCACTTAGTCTTA 14772 Score = 116 bits (128), Expect = 3e-21 Identities = 156/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || | ||||| ||| | || || | ||||| || | | | Sbjct 13715 ATGCAAATCTTCGTCAAGACTCTCACCGGCAAAACCATTACATTGGAAGTTGAGCCGAGC 13774 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || ||| | || || |||||| |||||||||||||| || ||||||||| Sbjct 13775 GATACCATTGAGAATGTTAAGGCCAAAATTCAAGATAAAGAGGGTATTCCCCCCGATCAG 13834 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG--AAATGTCAGCGATTACA 25352 || || | |||| || ||| |||||||||||||||| | | |||| |||||| | Sbjct 13835 CAGCGATTGATTTTCGCCGGAAAACAACTCGAAGATGGACGTACACTGTC--CGATTATA 13892 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTA 25387 |||||||||| || || || | || ||||| ||| Sbjct 13893 ATATTCAAAAGGAGTCGACTCTCCACTTAGTCTTA 13927 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || || || | ||||| ||| | ||||| | ||||| ||| || | Sbjct 13943 ATGCAGATCTTCGTTAAGACTCTCACCGGCAAAACCATCACTTTGGAAGTGGAACCCTCC 14002 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || ||| | || || || ||| ||||||||||| || || || ||||| Sbjct 14003 GATACCATTGAGAATGTTAAGGCCAAGATTCAGGATAAAGAGGGAATTCCCCCGGATCAA 14062 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || ||||| |||| || || |||||| | || || | | | | |||||||||||||| Sbjct 14063 CAGAGACTTATTTTCGCGGGAAAACAATTGGAGGACGGACGGACTCTCAGCGATTACAAT 14122 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 ||||| ||||| || || | |||||||| || Sbjct 14123 ATTCAGAAAGAGTCGACTCTCCATTTAGTATT 14154 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 ||| |||||| | ||||| |||||||||||||| ||| ||||||| | ||||| ||| | Sbjct 13483 CAAAATGCAAATCTTTGTGAAAACATTAACCGGTAAAACGATCACTTTGGAAGTGGAACC 13542 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 ||||| ||||| | ||||| || || || ||||| || || || || || Sbjct 13543 GTCGGATACGATCGAAAATGTAAAGGCGAAGATACAGGACAAAGAAGGGATTCCCCCGGA 13602 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTA 25350 ||| || |||||||| | || || |||||| | ||||| | | | | | |||||| Sbjct 13603 TCAACAGAGACTCATCTTCGCGGGGAAACAATTGGAAGACGGACGGACTCTTTCCGATTA 13662 Query 25351 CAATATTCAAAAAGAATCCACCATTCATTTAGT 25383 |||||||| ||||| || || | ||||| || Sbjct 13663 TAATATTCAGAAAGAGTCGACTCTCCATTTGGT 13695 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || ||| | |||||||| | ||||| | || || ||| | Sbjct 14171 ATGCAAATCTTCGTCAAGACACTCACCGGAAAGACCATCACATTGGAGGTGGAACCGTCT 14230 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||||||||| | || || || ||| || |||||||| || || ||||||||| Sbjct 14231 GATACTATCGAAAACGTTAAGGCTAAGATTCAAGACAAAGAGGGAATTCCCCCCGATCAG 14290 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || | | |||| | || |||||| | || || | | | | |||||||||||||| Sbjct 14291 CAGCGGTTGATTTTTGCGGGGAAACAATTGGAGGACGGACGGACTCTCAGCGATTACAAT 14350 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGT 25383 ||||| ||||| || || | ||||| || Sbjct 14351 ATTCAGAAAGAGTCGACTCTCCATTTGGT 14379 >seq32426 Length=2656 Score = 104 bits (114), Expect = 2e-17 Identities = 144/200 (72%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 25190 AAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAACGATACTATCGAGCAA 25249 |||||| | ||||| ||| | || || | ||||| || | | |||||| ||||| | Sbjct 645 AAAACACTCACCGGTAAAGCTATTACATTGGAAGTTGAGCCGAGCGATACCATCGAAAAT 586 Query 25250 GTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTAC 25309 ||||| ||||| || ||||||||||| || ||||||||||| || | || | | Sbjct 585 GTAAAGGCCAAAATACAGGACAAAGAGGGTATTCCTCCCGATCAGCAGCGATTGATCTTC 526 Query 25310 GGCGGCAAACAACTCGAAGATGATAG--AAATGTCAGCGATTACAATATTCAAAAAGAAT 25367 ||| |||||||||||||||| | | |||| | |||| ||||||||||| || | Sbjct 525 TCCGGGAAACAACTCGAAGATGGACGTACACTGTC--CAATTATAATATTCAAAAGGAGT 468 Query 25368 CCACCATTCATTTAGTGTTA 25387 | || | || ||||||||| Sbjct 467 CGACTCTCCACTTAGTGTTA 448 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || |||||| | | ||| ||| | ||||| | ||||| ||| || Sbjct 433 ATGCAAATATTCGTGAAAACACTCATCGGCAAAACTATCACTTTGGAAGTGGAACCCTCA 374 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || ||| | || ||| |||||| ||||||||||| || || || ||||| Sbjct 373 GACACCATTGAGAATGTCAAAGCCAAAATTCAAGATAAAGAGGGGATTCCTCCGGATCAA 314 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || | || || | | ||| |||||| | || || | | | | || || |||||| Sbjct 313 CAGCGTCTGATCTTTGCCGGAAAACAATTGGAGGACGGCCGTACTCTCTCGGACTACAAT 254 Query 25355 ATTCAAAAAGAATCCACCATTCA 25377 |||||||| ||||| || |||| Sbjct 253 ATTCAAAAGGAATCGACTCTTCA 231 >seq17817 Length=30685 Score = 96.9 bits (106), Expect = 3e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 25172 AACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCC 25231 || |||||| | ||||| ||||||||||| ||||| | || || | || |||||| | Sbjct 621 AAAATGCAAATCTTTGTGAAAACATTAACGGGAAAGACCATTACATTAGAGGTCGAACCG 680 Query 25232 AACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGAT 25291 | ||||| || ||| | |||||| || || || ||||| || || || || ||| Sbjct 681 AGTGATACGATAGAGAATGTAAAAGCGAAGATACAGGACAAAGAAGGGATTCCCCCGGAT 740 Query 25292 CAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTAC 25351 || || |||||||||| | || |||||| | ||||| | | | | | |||||| Sbjct 741 CAACAGAGACTCATTTTTGCGGGGAAACAATTGGAAGACGGACGGACTCTTTCCGATTAT 800 Query 25352 AATATTCAAAAAG 25364 ||||| ||||||| Sbjct 801 AATATACAAAAAG 813 >seq14450 Length=5806 Score = 96.9 bits (106), Expect = 3e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 25172 AACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCC 25231 || |||||| | || || || |||||||| ||||| | ||||| | ||||| ||| | Sbjct 5471 AAAATGCAAATTTTCGTTAAGACATTAACGGGAAAGACCATCACTTTGGAAGTGGAACCG 5412 Query 25232 AACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGAT 25291 ||||| || ||| | || || || || ||||||||||| || || || ||| Sbjct 5411 TCTGATACCATTGAGAATGTTAAGGCGAAGATACAGGATAAAGAGGGAATTCCCCCGGAT 5352 Query 25292 CAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTAC 25351 || || |||||||||| || || |||||| | ||||| | | | | | || ||||| Sbjct 5351 CAACAGAGACTCATTTTCGCGGGGAAACAATTGGAAGACGGACGGACTCTGAGTGATTAT 5292 Query 25352 AATATTCAAAAAG 25364 ||||| ||||||| Sbjct 5291 AATATACAAAAAG 5279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444312986707680