Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq17817 96.9 3e-15 seq21107 91.5 1e-13 seq14450 82.4 6e-11 >seq17817 Length=30685 Score = 96.9 bits (106), Expect = 3e-15 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 106254 TTAAAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAA 106313 |||||||||||||| ||||| |||||||| || || ||||||||||| | || ||| Sbjct 618 TTAAAAATGCAAATCTTTGTGAAAACATTAACGGGAAAGACCATTACATTAGAGGTCGAA 677 Query 106314 CCCGGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTT 106373 || | ||| | | | | || ||| || || ||||||||||| | ||| Sbjct 678 CCGAGTGATACGATAGAGAATGTAAAAGCGAAGATACAGGACAAAGAAGGGATTCCCCCG 737 Query 106374 GATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGAT 106433 |||||||| || || |||| |||||| |||||||| ||||| ||| | |||| Sbjct 738 GATCAACAGAGACTCATTTTTGCGGGGAAACAATTGGAAGACGGACGGACTCTTTCCGAT 797 Query 106434 TACAACATACAAAAAG 106449 || || |||||||||| Sbjct 798 TATAATATACAAAAAG 813 >seq21107 Length=15695 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| || || ||||| || | || ||||| ||||| || ||||| |||||| | Sbjct 13943 ATGCAGATCTTCGTTAAGACTCTCACCGGCAAAACCATCACTTTGGAAGTGGAACCCTCC 14002 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | ||| | || || || ||| || ||||| || | ||| |||||| Sbjct 14003 GATACCATTGAGAATGTTAAGGCCAAGATTCAGGATAAAGAGGGAATTCCCCCGGATCAA 14062 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || || ||||||| ||||| |||||||| || || ||| | |||||||||| Sbjct 14063 CAGAGACTTATTTTCGCGGGAAAACAATTGGAGGACGGACGGACTCTCAGCGATTACAAT 14122 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTG 106472 || || ||||| || || || |||||||||||| Sbjct 14123 ATTCAGAAAGAGTCGACTCTCCATTTAGTATTG 14155 >seq14450 Length=5806 Score = 82.4 bits (90), Expect = 6e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 106257 AAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCC 106316 |||||||||||||| ||||| ||||| || || |||||||| || ||||| ||||| Sbjct 5471 AAAATGCAAATTTTCGTTAAGACATTAACGGGAAAGACCATCACTTTGGAAGTGGAACCG 5412 Query 106317 GGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGAT 106376 ||| | ||| | || || || || || ||||| || | ||| ||| Sbjct 5411 TCTGATACCATTGAGAATGTTAAGGCGAAGATACAGGATAAAGAGGGAATTCCCCCGGAT 5352 Query 106377 CAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTAC 106436 ||||| || || |||| ||||| |||||||| ||||| ||| || | ||||| Sbjct 5351 CAACAGAGACTCATTTTCGCGGGGAAACAATTGGAAGACGGACGGACTCTGAGTGATTAT 5292 Query 106437 AACATACAAAAAG 106449 || |||||||||| Sbjct 5291 AATATACAAAAAG 5279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 401640923496992