Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq21107 100 3e-16 >seq21107 Length=15695 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 |||||||| | || ||| || ||||| || ||||||| | || || |||| ||| Sbjct 13695 ACCAAATGGAGAGTCGACTCTTTCTGAATATTATAATCGGAAAGAGTCCGTCCGTCTTCC 13636 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 | || || ||||| || || | | ||| || |||| |||| | || |||||| Sbjct 13635 AATTGTTTCCCCGCGAAGATGAGTCTCTGTTGATCCGGGGGAATCCCTTCTTTGTCCTGT 13576 Query 35648 ATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTA 35707 ||||| ||| | | || | | ||| || || |||||| |||| |||||||||||| Sbjct 13575 ATCTTCGCCTTTACATTTTCGATCGTATCCGACGGTTCCACTTCCAAAGTGATCGTTTTA 13516 Query 35708 CCCGTCAAAGTTTTCACAAATATCTGCATTCTG 35740 || || || ||||||||||| || |||||| || Sbjct 13515 CCGGTTAATGTTTTCACAAAGATTTGCATTTTG 13483 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 |||||||| | || ||| || ||||| ||||||||| | || || |||| ||| Sbjct 14379 ACCAAATGGAGAGTCGACTCTTTCTGAATATTGTAATCGCTGAGAGTCCGTCCGTCCTCC 14320 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 | || || |||||||| |||||||||||||| || | |||| | ||| ||||| Sbjct 14319 AATTGTTTCCCCGCAAAAATCAACCGCTGCTGATCGGGGGGAATTCCCTCTTTGTCTTGA 14260 Query 35648 ATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTA 35707 ||||| ||| | || | | || || || ||||||||||| ||||| || || Sbjct 14259 ATCTTAGCCTTAACGTTTTCGATAGTATCAGACGGTTCCACCTCCAATGTGATGGTCTTT 14200 Query 35708 CCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || | || || || || || ||||| Sbjct 14199 CCGGTGAGTGTCTTGACGAAGATTTGCAT 14171 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||||||||| || || || | | || || |||| || | || || || ||||| Sbjct 14978 TCCTTTTGAATATTATAGTCCGAGAGAGTACGGCCGTCCTCTAATTGTTTTCCGGCAAAG 14919 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTT-CAGAGT 35664 |||| |||||||| |||| ||||| | ||| || || ||| ||| |||| || | Sbjct 14918 ATCAGACGCTGCTGATCCGGAGGAATCCCCTCTTTATCT-TGAATTTTCGCTTTCACGTT 14860 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | || || | ||||||||||| ||||| |||||||| || | ||| || || Sbjct 14859 TTCGATGGTATCAGAGGGTTCCACCTCCAATGTGATGGTTTTACCGGTGAGAGTCTTGAC 14800 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 14799 GAAGATCTGCAT 14788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450002181120920