Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq32426 140 3e-28 seq21107 134 1e-26 seq68991 111 2e-19 seq14450 87.8 2e-12 seq8365 86.0 6e-12 >seq32426 Length=2656 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | || ||||| |||||||| || || |||||||||||||| |||||||| Sbjct 207 CCTCCGCGCAGACGCAAGACGAGGTGAAGAGTCGATTCCTTTTGAATATTGTAGTCCGAG 266 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | ||| || | ||||| || ||||| |||| |||||| ||||| || || Sbjct 267 AGAGTACGGCCGTCCTCCAATTGTTTTCCGGCAAAGATCAGACGCTGTTGATCCGGAGGA 326 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || ||||| ||||||||||| |||||| || | ||||| || | |||||| Sbjct 327 ATCCCCTCTTTATCTTGAATTTTGGCTTTGACATTCTCAATGGTGTCTGAGGGTTCCACT 386 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | ||| || ||||| ||| | | ||||| ||||| |||||||| Sbjct 387 TCCAAAGTGATAGTTTTGCCGATGAGTGTTTTCACGAATATTTGCAT 433 Score = 82.4 bits (90), Expect = 8e-11 Identities = 158/231 (68%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 134486 TCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCC 134545 ||| || | ||| || ||||| | ||| || || || ||||||||||| || || | | Sbjct 433 TCCCCCGCGGAGACGTAACACTAAGTGGAGAGTCGACTCCTTTTGAATATTATAATTGG- 491 Query 134546 AACGGTGTGAGAG--TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 || |||| | || ||||| ||||| || | || ||||| |||||||||||||| Sbjct 492 -ACAGTGTACGTCCATCTTCGAGTTGTTTCCCGGAGAAGATCAATCGCTGCTGATCGGGA 550 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || || || ||||| || || ||||| || || || | || ||| || || Sbjct 551 GGAATACCCTCTTTGTCCTGTATTTTGGCCTTTACATTTTCGATGGTATCGCTCGGCTCA 610 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || || | ||||| | ||||||||| | ||||| | | ||| ||||| Sbjct 611 ACTTCCAATGTAATAGCTTTACCGGTGAGTGTTTTGAAAAGGATTGGCATT 661 >seq21107 Length=15695 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | || ||||| |||||||| || || |||||||||||||| || ||||| Sbjct 15014 CCTCCGCGCAGACGCAAGACGAGGTGAAGAGTCGATTCCTTTTGAATATTATAGTCCGAG 14955 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | ||| || | ||||| || ||||| |||| |||||||||||| || || Sbjct 14954 AGAGTACGGCCGTCCTCTAATTGTTTTCCGGCAAAGATCAGACGCTGCTGATCCGGAGGA 14895 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || ||||| ||||||||||| ||| || || | || || || | |||||| Sbjct 14894 ATCCCCTCTTTATCTTGAATTTTCGCTTTCACGTTTTCGATGGTATCAGAGGGTTCCACC 14835 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | || |||||||||||||| | ||| || ||||| || ||||| Sbjct 14834 TCCAATGTGATGGTTTTACCGGTGAGAGTCTTGACGAAGATCTGCAT 14788 Score = 120 bits (132), Expect = 3e-22 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || || || | ||| || || || ||||||||||| || || ||| Sbjct 13941 CCCCCGCGGAGACGTAAGACTAAGTGGAGAGTCGACTCCTTTTGAATATTATAATCGG-- 13884 Query 134547 ACGGTGTGAGAG--TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 || |||| | || ||||| ||||| || || |||||||| |||||||||||||| | Sbjct 13883 ACAGTGTACGTCCATCTTCGAGTTGTTTTCCGGCGAAAATCAATCGCTGCTGATCGGGGG 13824 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || || ||||| ||||||||||| || || || | || ||| || || | Sbjct 13823 GAATACCCTCTTTATCTTGAATTTTGGCCTTAACATTCTCAATGGTATCGCTCGGCTCAA 13764 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || | ||||||||||| ||||| | ||| || ||||| |||||||| Sbjct 13763 CTTCCAATGTAATGGTTTTGCCGGTGAGAGTCTTGACGAAGATTTGCAT 13715 Score = 120 bits (132), Expect = 3e-22 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || || || | ||| || || || |||||||| || || || ||| Sbjct 14786 CCCCCGCGGAGACGTAAGACTAAGTGGAGAGTCGACTCCTTTTGGATATTATAATCGG-- 14729 Query 134547 ACGGTGTGAGAG--TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 || |||| | || ||||| ||||| || || |||||||| |||||||||||||| | Sbjct 14728 ACAGTGTACGTCCATCTTCGAGTTGTTTCCCGGCGAAAATCAATCGCTGCTGATCGGGGG 14669 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || || ||||| ||||||||||| || || || | || ||| || ||| | Sbjct 14668 GAATACCCTCTTTGTCTTGAATTTTGGCCTTTACATTTTCGATGGTATCGCTCGGTTCAA 14609 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || | ||||||||||||||||| | ||||| || || |||||||| Sbjct 14608 CTTCCAATGTAATGGTTTTACCGGTGAGTGTTTTGACAAAGATTTGCAT 14560 Score = 109 bits (120), Expect = 6e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 ||||||| || | || || || || || || ||||| ||||| |||| | || | Sbjct 14388 AGTCGCAGTACCAAATGGAGAGTCGACTCTTTCTGAATATTGTAATCGCTGAGAGTCCGT 14329 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || | ||||| || ||||||||||| |||||||||||||| || || || ||| Sbjct 14328 CCGTCCTCCAATTGTTTCCCCGCAAAAATCAACCGCTGCTGATCGGGGGGAATTCCCTCT 14269 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || |||||||| || || || || | || || |||| |||||| || | || Sbjct 14268 TTGTCTTGAATCTTAGCCTTAACGTTTTCGATAGTATCAGACGGTTCCACCTCCAATGTG 14209 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || ||||| | || || ||||| |||||||| Sbjct 14208 ATGGTCTTTCCGGTGAGTGTCTTGACGAAGATTTGCAT 14171 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| ||||| || | || | || || || || || || ||||| || || ||| | Sbjct 13713 CCTCCCCTGAGGCGAAGAACCAAATGGAGAGTCGACTCTTTCTGAATATTATAATCGGAA 13654 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | ||| || | ||||| || || || || | | ||| ||||| || || Sbjct 13653 AGAGTCCGTCCGTCTTCCAATTGTTTCCCCGCGAAGATGAGTCTCTGTTGATCCGGGGGA 13594 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || |||||||| || || || || || || || | || || |||| |||||| Sbjct 13593 ATCCCTTCTTTGTCCTGTATCTTCGCCTTTACATTTTCGATCGTATCCGACGGTTCCACT 13534 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || | ||| || |||||||||||||| ||||| || || |||||||||||| Sbjct 13533 TCCAAAGTGATCGTTTTACCGGTTAATGTTTTCACAAAGATTTGCATTTTG 13483 >seq68991 Length=328 Score = 111 bits (122), Expect = 2e-19 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 134568 TGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATT 134627 ||||| || ||||| |||| |||||| ||||| || || || |||||||| || || ||| Sbjct 26 TGTTTTCCGGCAAAGATCAGACGCTGTTGATCCGGGGGAATCCCTTCTTTGTCCTGTATT 85 Query 134628 TTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCG 134687 || |||||| || | || ||||| | ||| || || | ||||||||||||||| Sbjct 86 TTCGCTTTGACATTTTCGATAGTATCGGAGGGTTCGACTTCCAATGTAATGGTTTTACCG 145 Query 134688 GTTAAAGTTTTAACGAAAATTTGCAT 134713 || | |||||| ||||| |||||||| Sbjct 146 GTGAGAGTTTTCACGAATATTTGCAT 171 >seq14450 Length=5806 Score = 87.8 bits (96), Expect = 2e-12 Identities = 116/160 (73%), Gaps = 1/160 (1%) Strand=Plus/Plus Query 134568 TGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATT 134627 ||||| || || ||||| | | ||| ||||| || || || || ||||| || || || Sbjct 5323 TGTTTCCCCGCGAAAATGAGTCTCTGTTGATCCGGGGGAATTCCCTCTTTATCCTGTATC 5382 Query 134628 TTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCG 134687 || || || || | || || |||| |||||| || | ||| ||||| || || Sbjct 5383 TTCGCCTTAACATTCTCAATGGTATCAGACGGTTCCACTTCCAAAGTGATGGTCTTTCCC 5442 Query 134688 GTTAAAGTTTTAACGAAAATTTGCATTTT-GTTTTTGTTC 134726 ||||| || |||||||||||||||||||| || ||| ||| Sbjct 5443 GTTAATGTCTTAACGAAAATTTGCATTTTCGTATTTTTTC 5482 >seq8365 Length=5311 Score = 86.0 bits (94), Expect = 6e-12 Identities = 153/219 (70%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 7551 CGCGGAACGAATTCAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACAT 7610 |||||||||| || |||||||| |||| || || ||||| || ||||| | ||||| Sbjct 2384 CGCGGAACGACCGCAGCACATGCTCATGCGTGTCGCTGTGGGGATACACGGAAATGACAT 2325 Query 7611 TGACGCCGCCTTGGAAACGTACCAAATGATGTCTTTGAA--ACAGTTTACGCACGCTTCG 7668 |||||| ||| | || ||||| | | ||||| ||| | |||||| || || || Sbjct 2324 TGACGCTGCCATTGAGACGTATAATCTCATGTC--CGAACGATGGTTTACTCATGCATCA 2267 Query 7669 CCCACCATGTTTGCCGCGGGCACAAACGC-GCCTCAATTGTCCTCGTGTTTTTTGCTAAC 7727 || || |||| || || || ||| || ||||||||| ||||| || | || Sbjct 2266 CCGACACTGTTCAATGCCGGAAC-TCCGCACCCACAATTGTCCAGTTGTTTCTTATTGAC 2208 Query 7728 CATGCGCGAAGACAGCATCGACGGCATTTACAACACGCT 7766 |||| || ||||| || || || |||||| |||| || Sbjct 2207 CATGAAAGATGACAGTATTGAGGGGATTTACGACACACT 2169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 504511116251480