Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq8365 610 9e-170 seq21474 129 8e-25 >seq8365 Length=5311 Score = 610 bits (676), Expect = 9e-170 Identities = 1504/2252 (67%), Gaps = 43/2252 (2%) Strand=Plus/Plus Query 68395 GCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAA 68454 |||||||| ||||| | ||||||||| || || || | || | |||| |||| || Sbjct 639 GCGGGTTTCGTACGCAAATAGTACATCCCCGTCTTTAACCCCAATTTCCAGCCGTGAAAG 698 Query 68455 TGCATACTTGTTAG-TTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACT 68513 ||||| ||| | |||| || | || | || |||||||| || | |||||| || Sbjct 699 TGCATCGATGTGATCTTTGCCATTG-TGGGTGCTGCGATATGAATGTTAAGCGATTGGCT 757 Query 68514 TTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAA---TACTCTTTTGAGGAAT 68570 ||| || |||||||| || | ||| || | ||||| |||| ||| || | | || Sbjct 758 TTGGTCAATGAAAGCCCCGCGATCGGCAGACATTTCAATAACTGTACGCTGT---GATAT 814 Query 68571 TTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAAGGCTCGTATT---TTGAAT 68627 |||||| | || || | | | || | ||| | |||| | | | | |||||| Sbjct 815 TTCCCATACTGTTTTGTACAGTTCCTTCAAATCCTGGGGAATTCCCTCAATCAATTGAAT 874 Query 68628 GGATCCACCATCGGATATAATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGT 68687 ||||| || || || ||| |||||| | | ||||||||| | || | || || Sbjct 875 CGATCCGTGATTAGAAATTATTTCATTCTTAAGATTATCATTCCAAAGTTCACGTTCAGT 934 Query 68688 TAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGT 68747 ||| |||| | ||||| ||||||| ||||||||||| || || || ||||| || | Sbjct 935 CAAATCTCTCAAAAGATGATGATTAACGATTTGAAATTCTCCGGACAAAACTCTTCGTGA 994 Query 68748 GTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGA 68807 || |||||||| ||||| | ||| ||||| || |||||||||| ||| || || || || Sbjct 995 ATATATATTACTCGTATACGCTTCAACAGACTCGTTATTTCCCAAAATCTGTGCTGTCGA 1054 Query 68808 TGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATC 68867 ||| || ||||| ||||| | ||| | ||| || || || || || || |||| || || Sbjct 1055 TGCCGTCGGCATCGGTGCTAACAACAGACTGTTCCTGAGTCCGTGCATTTTGATCTTTTC 1114 Query 68868 TTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAG 68927 || || | |||||| ||| || || | ||| |||||| | || || || || Sbjct 1115 CTTCAGTTCAGTCCAATTCCATAGGTCTGTCGGTGTCTTATTCCACATGTCATACTGCAG 1174 Query 68928 AATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAG 68987 || || ||| || || || | ||||| || ||||| || | ||||| || | Sbjct 1175 TATCCCTTTAGAGGCGGGAGAACCCTCATATGACTCGTAAGGACCATACTGTTGTGCCAA 1234 Query 68988 TTCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATC 69047 ||||||||| | || | || ||| |||| | ||| || || || | |||||||| Sbjct 1235 TTCACAACTCGATTCGAGAGCCCCGAAATATAATGTCTCAAATATTTGAATATTGAGACG 1294 Query 69048 TTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTG 69107 || ||||| |||| || || || ||| | | ||||| || ||||| || |||||||| Sbjct 1295 TTTCGCTTCGGGACTCTCAAACGGGTAACGCATGAGAATGAACGCATCGGCTAATCCCTG 1354 Query 69108 AACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATA 69167 ||| ||||| || || || | | || ||||| || | ||| | ||| |||| ||||| Sbjct 1355 AACTCCAATGCCAATCGGACGGTTCCTTTTATTGGAGCGTTCCGTTTCAGGAACGGGATA 1414 Query 69168 ATAATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAG 69227 |||||||||||| ||||| ||||| | |||||| | |||||| | || ||||| || Sbjct 1415 ATAATTAATATCGATAATCTTATTTAAGTTTCGGGTAATGACTTTAGCGACATCCTTGAG 1474 Query 69228 -TTTGAGAAAATCAAATCGTCCATCTAT-------AACAAACATATTCAGTGCTACAGAT 69279 |||| | || ||||| || | | | || ||| ||| ||||| || || Sbjct 1475 CTTTGCG-AAGTCAAA-GGTGCGGGTTTTGGTGTCGACGAACCGATTGAGTGCGACTGAA 1532 Query 69280 GCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGA 69339 || | |||||| || || | || | | | || ||||| | || || || |||||| Sbjct 1533 GCCAAATTACACACGGCAATTTCGTCGGGAGATGAATATTCAACGATTTCAGTGCATAGA 1592 Query 69340 TTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTG 69399 || ||||| || || || |||||||| ||||| |||| ||| || ||| || Sbjct 1593 TTTGAGCATTTAATGGTTCCGAGATTTTGTTGATTGGACTTTCGGTTGCAATGGTCTTTA 1652 Query 69400 TAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCA-AACGAC 69458 |||| || |||| || || || || ||||||| |||| ||| | | ||| || || Sbjct 1653 TAAACCATGTACGGTGTGCCCGTCTCGATCTGAGCCTCGACAATGGCATACCACAATGA- 1711 Query 69459 CCTAGCATTTA--TTACGGTCTTGTAACGCTTCTCTTTTTCATATTGTGTATATAGCCGT 69516 | ||| | | ||| ||||| ||| ||| |||| |||| ||||| Sbjct 1712 CTGAGCCCGAACCTGACG--TTTGTATTTCTTTTCTCTTTCGTATTTCTCATATAAATCC 1769 Query 69517 TCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGAC 69576 || || | | ||||| |||| || || || ||||| | |||||||||||||||| Sbjct 1770 TCAAACGCCTGACCCCACGTGTCATGTAAACCCGGGCATTCGTGTGGACACATCAATGAC 1829 Query 69577 CACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATA-AA 69635 || | |||| | ||| |||||||| || | ||||||||||||||| || ||| || Sbjct 1830 CATATCCCATCGGATTCAACACGTTTCATGAACAAATCGGGAATCCAAAG-GCCATAGAA 1888 Query 69636 GAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCAT 69695 | || | | | |||| ||| || || || || |||| ||||| || || | Sbjct 1889 CAAGTCACGTGCACGTATTTCCTCAGAACCCGTGTTCTTCCTAAGGTCGAGGAATTCGAA 1948 Query 69696 AATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCC 69755 | ||| | |||||| ||||| | || | || | | || || ||||| || || || Sbjct 1949 TACATCGGCATGCCACGGTTCGATGTAAACTGCGAAAGCGCCGGGACGTTTGTTCCCCCC 2008 Query 69756 CTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGA 69815 |||||| | ||||| |||||| || || | || | || |||||| | | ||||| || Sbjct 2009 CTGATCGACGTATCGGGCAGTATTGTTGAACACGCGCAACATCGGGACCAATCCATTTGA 2068 Query 69816 TTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACC 69875 | | ||||| || || | ||||||| | || | || | || | || | || || Sbjct 2069 TATGCCATTCGTACCCGCAATATAAGTGCCCTTAGCCCTTATGCAATGAACATTTATTCC 2128 Query 69876 TATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTC 69935 || || || || ||| || || | ||| || |||| | |||||| || || ||||| Sbjct 2129 GATACCACCGGCAGCTTTCGATATGACAGCGCATTGTTTGAGTGTGTCGTAAATCCCCTC 2188 Query 69936 TATGCTATCATCTATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTC 69994 || || |||||| |||| || || ||| ||||| || |||| ||| | || ||||| Sbjct 2189 AATACTGTCATCTTTCATGGTCAATAAG-AAACAACTGGACAATTGTGGGTGCGGAGTTC 2247 Query 69995 CCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATG 70054 | ||||| || | ||| || ||||| ||||| |||||| ||| || | ||||| || | Sbjct 2248 CGGCATTGAACAGTGTCGGTGATGCATGAGTAAACCATCGTTCGGACATGAGATTATACG 2307 Query 70055 TTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAACATAT 70114 | ||||| || | || || || || || || | ||||||||||| | ||| | Sbjct 2308 TCTCAATGGCAGCGTCAATGTCATTTCCGTGTATCCCCACAGCGACACGCATGAGCATGT 2367 Query 70115 GCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTT 70174 |||| |||||||| | ||| |||| || || | | ||||| || || |||| Sbjct 2368 GCTGCGGTCGTTCCGCGACTTTCCTATTGATCTTAATTAAATATGACCGCTCAAGTGTTT 2427 Query 70175 TAAACCCAAAATAGTTGT-ATGAAAAGTCTCTTTCGTAAATAATAACAGAATTTAGTTTA 70233 | || || ||||| |||| |||| || || | || ||||| || | ||||| ||| Sbjct 2428 TGAAACCGAAATAATTGTAATGATAA-TCGCGATCATAAATGATGGCGGAATTGAGTCGT 2486 Query 70234 TCCTTATATTTGGTAACTATATCCATAACAGTAGGTGAGATAATCGGAGATCGTTTACCA 70293 || || || || | ||| || | ||| || ||||| | | |||| Sbjct 2487 TCGGCATTCTTTTCAATGACATCGTAAATCTCATCTGAAATCATCGGTGTTTTGAGACCA 2546 Query 70294 TT-TTTAGGATTAACATAGTTGA-ATAAATCTTCCATTACATCACTAAATAGtttttttG 70351 || | | || |||| ||| | | ||| || ||||| ||| ||| |||| Sbjct 2547 TTACTCTCGTTTCTCATA--TGATAGAGATCCCTAATGACATCGGAAAAGTTTTTCTTTG 2604 Query 70352 TTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAATAGCATAGTCAGGATGTT 70411 |||| || ||||||||||| | || || | || || ||||||||||| || | ||||| Sbjct 2605 TTTCTTTATGTAAATTTGACACTGCAATACGTGCCGCGAGAATAGCATAATCGGCATGTT 2664 Query 70412 GTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTAATTCTATAGTTGTAACTC 70471 || || || || || |||||||| ||||| |||| ||||| | || || || | Sbjct 2665 TCGTTGTCATTGTTGCGGCGATTTCCGCCGCTAAATTATCCAATTCAACGGTCGTGACAC 2724 Query 70472 CGTTATATAGCCCTTGAATAACTTTCATGGCTATTTTGATAGGATCTATG-AATTCTGTG 70530 | ||||| ||| || || |||| | ||| | ||| ||| ||||| || Sbjct 2725 CCGAATATATCCCGGCGATGACCTTCAATGTGATTGACGGTGCATCGATGTAATTC-ATG 2783 Query 70531 TTCAGACCATAACATAATTTTCTAATACGAGATGTAATTTTATCAAACATAAC--ATTCT 70588 | || |||||| || | ||| || || ||||| ||||| || |||||||| ||||| Sbjct 2784 TCCAAACCATAGCAGAGTTTCACGATTCGGGATGTGATTTTGTCGAACATAACTGATTCT 2843 Query 70589 CCTTATTTCCACTTCGTTTAATGACGTACATT 70620 || ||| || |||||| || |||||| Sbjct 2844 --TTTCGTCCGTCTCTTTTAATTACATACATT 2873 >seq21474 Length=6928 Score = 129 bits (142), Expect = 8e-25 Identities = 218/313 (70%), Gaps = 2/313 (1%) Strand=Plus/Minus Query 39451 ATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTAAC 39510 ||| || ||| |||| ||||||| ||||||| | |||| ||||| || |||||| || Sbjct 6036 ATCAGCGACATATTCAATGTATGACTTCATCAGTACACAGTTCATACCGATGAGTGCGAC 5977 Query 39511 TGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTAT-CGATG 39569 || || || || || | |||||| | ||| ||| || || || || | || ||| | Sbjct 5976 CGGAAGTGCATCGGTCAAAAACTCCTGTTCAATGGTCACAGCTTCAGTAACAATACGA-G 5918 Query 39570 TTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAAGTCAC 39629 | | | || | | ||| || | | ||||||||| | ||| || ||||| |||| Sbjct 5917 TGATTTGTTCGACCGTTGGTTTATTAACGATATGTTTAAAGAGTAAACACGCGAAATCAC 5858 Query 39630 AATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGAC 39689 |||| || |||||||| | || | ||| ||| || || | ||| ||||| || | Sbjct 5857 AATGAAGTCCCTCATCACGTGATATCAGTTCATTACTGAAGGTCAATCCCGGCATAAGTC 5798 Query 39690 CACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTG 39749 |||| || || ||||||||||| | || || || || |||||| || || || |||| Sbjct 5797 CACGTTTCTTTAGCCAAAATATTGAGGCGAATGAACCGCTAAAGAATATACCCTCAACTG 5738 Query 39750 CTGCAAATGCAAC 39762 |||||| ||||| Sbjct 5737 ATGCAAACGCAAC 5725 Score = 95.1 bits (104), Expect = 2e-14 Identities = 94/119 (79%), Gaps = 2/119 (2%) Strand=Plus/Minus Query 39883 AACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTG 39942 || ||| || || || || |||||||||||||| ||||| || || ||||| || || || Sbjct 5241 AATATACGTGTCAATCAATAGACTATACATTTCCGAATGTATATTCTCAATTGCAATTTG 5182 Query 39943 AAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTC-TGAACAAAATCTTTCCGCC 40000 ||| |||||||| |||| |||||||||| ||| || || |||| |||| ||||||| Sbjct 5181 AAACCCGTAAAAGCATCGCGCTTCAGTAACTTGAACTTCACGAAC-GAATCGTTCCGCC 5124 Score = 93.3 bits (102), Expect = 6e-14 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 40001 AAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAA 40060 ||||| ||||| || ||||| ||||| || || ||||| ||||| |||||| |||||| Sbjct 4576 AAATTCTCATTAACGATTCCGTCACTCGCAGCGAAAAACGCCAAAACATGTGATATAAAA 4517 Query 40061 TATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCT 40120 | ||||| | | | | | | ||| || | ||||| | ||| |||||| Sbjct 4516 TGACGTTCATTGTCATTGAGTCTGTGCCAATCGGTCATATCCCGACTCAAATCCACTTCT 4457 Query 40121 TCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATATTGT 40180 || | ||||||||||| |||||||| || || ||||| |||| ||||| |||| | Sbjct 4456 TCGACAGTCCAAAACGATGCCTCTGCTTTCTTATACATCATCCAAATATCGTGATACTCA 4397 Query 40181 ATTGGAAAAATAACAAATC 40199 || || || || || |||| Sbjct 4396 ATCGGGAACATTACGAATC 4378 Score = 93.3 bits (102), Expect = 6e-14 Identities = 112/152 (74%), Gaps = 3/152 (2%) Strand=Plus/Minus Query 39269 CTTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGT---GACATAACTCCCATT 39325 ||| ||||||| |||| ||| ||| | || ||||||| ||||| || || | Sbjct 6527 CTTCAAAAGTCCGCATCCAAAACAAATTTATGCTCTTCTTTATTGGACATTACACCACTC 6468 Query 39326 TTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 39385 ||||| ||||| || || | ||||| || ||||| ||||| || |||||||| || | | Sbjct 6467 TTTTGATATTCGCCGACTCTCTTCTCAAAGAAATTCGTTTTCCCCTCCAATGAAATCTGT 6408 Query 39386 TCCATGAAATCAAACGGATTAGTTGCATTATA 39417 ||||||||||| || ||||| | | |||||| Sbjct 6407 TCCATGAAATCGAAAGGATTCGACGAATTATA 6376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 685702854324360