Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq8365 107 2e-18 >seq8365 Length=5311 Score = 107 bits (118), Expect = 2e-18 Identities = 866/1381 (63%), Gaps = 31/1381 (2%) Strand=Plus/Plus Query 110720 GTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATT 110779 || || | ||||| | || ||||| ||||| || ||||| || || || || ||||| Sbjct 1008 GTATACGCTTCAACAGACTCGTTATTTCCCAAAATCTGTGCTGTCGATGCCGTCGGCATC 1067 Query 110780 GGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCC 110839 ||||| | ||| |||||||| | || || | | ||||| |||||| || || | Sbjct 1068 GGTGCTAACAACAGACTGTTCCTGAGTCCGTGCATTTTGATCTTTTCCTTCAGTTCAGTC 1127 Query 110840 CAGT--CGTAGTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGG 110897 || | | ||| | | | ||| || |||| |||||||| |||| || | ||||| | Sbjct 1128 CAATTCCATAGGTCTG-TCGGTGTCTTATTCC-ACATGTCATACTGCAGTATCCCTTTAG 1185 Query 110898 ACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCG 110957 | ||||||||||||||| | | || || | ||| | || ||||||||||| |||| Sbjct 1186 AGGCGGGAGAACCCTCATATGACTCGTAAGGACCATACTGTTGTGCCAATTCACAACTCG 1245 Query 110958 CCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCAT 111017 || || | || ||| | || ||||| || || ||| | || ||||| Sbjct 1246 ATTCGAGAGCCCCGAAATATAATGTCTCAAATATTTGAATATTGAGACGTTTCGCTTCGG 1305 Query 111018 CTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAAC 111077 ||||| | ||| || | ||| || |||| || | || ||||| || | | Sbjct 1306 GACTCTCAAACGGGTAACGCATGAGAATGAACGCATCGGCTAATCCCTGAACTCCAATGC 1365 Query 111078 CAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTC---AACGGGATAAAAATTTC 111134 |||| || | || | |||| || || | || || |||||||||| |||| Sbjct 1366 CAATCGGACGGTTCCTTTTATTGGA---GCGTTCCGTTTCAGGAACGGGATAATAATTAA 1422 Query 111135 TGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCAT 111194 | || || | |||| ||| ||||| | || | || || | || ||| | Sbjct 1423 TATCGATAATCTTATTTAAGTTTCGGGTAATGACTTTAGCGACATCCTTGAGCTTTGCGA 1482 Query 111195 AATCAAAAGTGCGAGTCTCTTCATTGACATAC--TTTGGAAGGGCGATTGATGCCAAATT 111252 | ||||| ||||| || | | ||| || ||| || |||| ||| |||||||| Sbjct 1483 AGTCAAAGGTGCGGGTTTTGGTGTCGACGAACCGATTG--AGTGCGACTGAAGCCAAATT 1540 Query 111253 GCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACT 111312 || || || | || || | || || || | ||||| || |||| || || | Sbjct 1541 ACACACGGCAATTTCGTCGGGAGATGAATATTCAACGATTTCAGTGCATAGATTTGAGCA 1600 Query 111313 CTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCAT 111372 ||||| || || | ||| | ||| || ||| |||||| || || || | ||| Sbjct 1601 TTTAATGGTTCCGAGATTTTGTTGATTGGACTTTCGGTTGCAATGGTCTTTATAAACCAT 1660 Query 111373 GTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA-AACATCGGCGGCTG 111431 ||| || || |||||||| |||| | | || ||| || | ||| || | | | | | Sbjct 1661 GTACGGTGTGCCCGTCTCGATCTGAGCCTCGACAATGGCATACCACAATGACTGAGCCCG 1720 Query 111432 GTACAATGGCGTTGGCCCGTCCCTCCGC-CTCGTACTTTGTGTAGAGGGCTTCAAACTCC 111490 | || |||| | || | | | ||||| || || | | |||||| || Sbjct 1721 --AACCTGACGTTTGTATTTCTTTTCTCTTTCGTATTTCTCATATAAATCCTCAAACGCC 1778 Query 111491 TCACCCACCGCGTCGGAGAGACCTGGTGCCTT-GTCTGGACAGAAAAGAGACCATTGACC 111549 | |||| || ||| | ||| || || || || |||||| | | |||||| || Sbjct 1779 TGACCCCACGTGTCATGTAAACCCGG-GCATTCGTGTGGACACATCAATGACCATATCCC 1837 Query 111550 ACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTC- 111608 | | ||||| || |||||||| | || |||||||| ||| | || | || | Sbjct 1838 ATCGGATTCAACACGTTTCATGAACAAATCGGGAATCCAAAGGCCATAGAACAAGTCACG 1897 Query 111609 TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAA-CTCAAGGAACTCCATGATATCC 111667 | || || || || ||| ||| || ||| || ||||| || | | ||| Sbjct 1898 TGCA-CGTATTTCCTCAGAACCCGTGTT-CTTCCTAAGGTCGAGGAATTCGAATACATCG 1955 Query 111668 GCGTGCCATGGCTCAAGATAGACTGCGATAGATCC----CTTTCGACGCCCAGCTTGATT 111723 || ||||| || || | || ||||||| || || | || | ||| | |||| Sbjct 1956 GCATGCCACGGTTCGATGTAAACTGCGAAAGCGCCGGGACGTTTG-TTCCCCCCCTGATC 2014 Query 111724 TACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACC 111783 || || || || || ||| || ||||| | ||| || | | |||| |||| || Sbjct 2015 GACGTATCGGGCAGTATTGTTGAACACGCGCAACATCGGGACCAATCCATTTGATATGCC 2074 Query 111784 ATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACC 111843 ||| || ||| |||| || || || || | ||| | | || || ||||| Sbjct 2075 ATTCGTACCCGCAATATAAGTGCCCTTAGCCCTTATGCAATGAACATTTATTCCGATACC 2134 Query 111844 CCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGA 111903 || || || || || || || | | || || | || || || | || Sbjct 2135 ACCGGCAGCTTTCGATATGACAGCGCATTGTTTGAGTGTGTCGTAAATCCCCTCAATACT 2194 Query 111904 GTCCTCCTTGTTGG-CGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCAT 111962 ||| || || ||| | |||| ||| |||||||||| || || || || || |||| Sbjct 2195 GTCATCTTTCATGGTCAATAA-GAAACAACTGGACAATTGTGGGTGCGGAGTTCCGGCAT 2253 Query 111963 TGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTATGTCTCCA 112022 |||| || || |||| ||| ||| | ||| | || |||||| | || ||||| | Sbjct 2254 TGAACAGTGTCGGTGATGCATGAGTAAACCATCGTTCGGACATGAGATTATACGTCTCAA 2313 Query 112023 AGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTG 112082 | ||| |||||||| | ||||| || || | ||||| ||||||| ||||| ||| | Sbjct 2314 TGGCAGCGTCAATGTCATTTCCGTGTATCCCCACAGCGACACGCATGAGCATGTGCTGCG 2373 Query 112083 G 112083 | Sbjct 2374 G 2374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 626929419170400