Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq8365 158 1e-33 seq21474 95.1 1e-14 >seq8365 Length=5311 Score = 158 bits (174), Expect = 1e-33 Identities = 471/720 (65%), Gaps = 14/720 (2%) Strand=Plus/Minus Query 104886 TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAG 104945 ||||| | || ||| || || |||| | |||||| || ||||| |||||| |||| |||| Sbjct 1707 TGTGGTATGCCATTGTCGAGGCTCAGATCGAGACGGGCACACCGTACATGGTTTATAAAG 1648 Query 104946 ACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCT 105005 || || |||| |||| |||||| | ||| | || || || | || ||||| | Sbjct 1647 ACCATTGCAACCGAAAGTCCAATCAACAAAATCTCGGAACCATTAAATGCTCAAATCTAT 1588 Query 105006 GTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAA 105065 | || |||||| | |||| | || || || | || |||||||| | || ||| Sbjct 1587 GCACTGAAATCGTTGAATATTCATCTCCCGACGAAATTGCCGTGTGTAATTTGGCTTCAG 1528 Query 105066 TCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACG 105125 |||| ||| || || || | | || || ||||| | | ||| ||| | | Sbjct 1527 TCGCACTCAATCGGTTCGTCGACACCAAAACCCGCACCTTTGACTTCGCAAAGCTCAAGG 1468 Query 105126 AAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCG 105185 | || | ||| | ||| |||| |||| | |||| |||| |||| ||| |||| Sbjct 1467 ATGTCGCTAAAGTCATTACCCGAAACTTAAATAAGATTATCGATATTAATTATTATCCCG 1408 Query 105186 TT---GAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGG 105242 || || || | || || |||| || ||||||| ||||| | || ||||||| Sbjct 1407 TTCCTGAAACGGAACGC---TCCAATAAAAGGAACCGTCCGATTGGCATTGGAGTTCAGG 1351 Query 105243 GTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGAT--TCCGACGAAGCGAAGGA 105300 | | || |||| |||||||| || || | ||||| ||| ||||||||| Sbjct 1350 GATTAGCCGATGCGTTCATTCTCATGCGTTACCCGTTTGAGAGTCC--CGAAGCGAAACG 1293 Query 105301 AATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCGAGTTCAGAGTT 105360 ||||| | ||||||||||| | ||| || ||||| || |||||| || || Sbjct 1292 TCTCAATATTCAAATATTTGAGACATTATATTTCGGGGCTCTCGAATCGAGTTGTGAATT 1233 Query 105361 GGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCT 105420 |||| | ||||||| || || | | |||||||||||| || || ||||| | || Sbjct 1232 GGCACAACAGTATGGTCCTTACGAGTCATATGAGGGTTCTCCCGCCTCTAAAGGGATACT 1173 Query 105421 TCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACG--ACTGGGAAGCTCTCAAG 105478 || | ||| |||| |||| || ||| | | ||| | | ||| | || ||| Sbjct 1172 GCAGTATGACATGT-GGAATAAGACACCGA-CAGACCTATGGAATTGGACTGAACTGAAG 1115 Query 105479 GAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCC 105538 ||| ||||| | | || || | |||||||| | | || || ||||| || || Sbjct 1114 GAAAAGATCAAAATGCACGGACTCAGGAACAGTCTGTTGTTAGCACCGATGCCGACGGCA 1055 Query 105539 TCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTAT 105598 || || ||||| || ||||| ||||| || | ||||| | || |||| || || ||| Sbjct 1054 TCGACAGCACAGATTTTGGGAAATAACGAGTCTGTTGAAGCGTATACGAGTAATATATAT 995 >seq21474 Length=6928 Score = 95.1 bits (104), Expect = 1e-14 Identities = 225/332 (68%), Gaps = 10/332 (3%) Strand=Plus/Plus Query 94798 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 94857 ||||| || || | | || ||||| | ||||||||||| ||||| ||||| ||| Sbjct 5710 TTTGCCGAACGTTTAGTTGCGTTTGCATCAGTTGAGGGTATATTCTTTAGCGGTTCATTC 5769 Query 94858 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 94917 | | || | |||||| ||||| || || || ||||| || | |||| || || Sbjct 5770 GCCTCAATATTTTGGCTAAAGAAACGTGGACTTATGCCGGGATTGACCTTCAGTAATGAA 5829 Query 94918 CTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCG-GTGGAACTTTTCAAATTATT 94976 || || || ||||| |||||||| || || || ||| || | ||| || ||| Sbjct 5830 CTGATATCACGTGATGAGGGACTTCATTGTGATTTCGCGTGTTTACTCTTTAAACATATC 5889 Query 94977 GCGTATTAAACCAACGACTGAGACTATTCATTC-TATTGTTAAGGAAGCCGTTGAGATTG 95035 | || |||||||||| || || | ||| || |||||||| ||||| || |||| Sbjct 5890 G-TTAATAAACCAACGGTCGA-ACAAATCACTCGTATTGTTACTGAAGCTGTGACCATTG 5947 Query 95036 AGAAAGGATTCATATTG---GATGCCCTTCCATGCGCTCTCATCGGTATGAATTCTGAAA 95092 | | |||| | | ||| ||||| ||||| ||| |||||||||||||| | || | Sbjct 5948 A-ACAGGAGT--TTTTGACCGATGCACTTCCGGTCGCACTCATCGGTATGAACTGTGTAC 6004 Query 95093 AAATGTCTGAATATATTGAGTATGTATCTGAT 95124 ||| ||| ||||| ||||| ||||| Sbjct 6005 TGATGAAGTCATACATTGAATATGTCGCTGAT 6036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582236820048760