Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq8365 149 7e-31 >seq8365 Length=5311 Score = 149 bits (164), Expect = 7e-31 Identities = 483/742 (65%), Gaps = 10/742 (1%) Strand=Plus/Minus Query 19211 CCGACCCTTTTCAACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCT 19270 ||||| || ||||| ||||| || |||| || |||| || |||||| || || | Sbjct 2266 CCGACACTGTTCAATGCCGGAACTCCGCACCCACAATTGTCCAGTTGTTTCTTATTGACC 2207 Query 19271 ATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCC 19330 ||||| |||||||| |||||||| || ||||| || ||||| | ||||| ||| || Sbjct 2206 ATGAAAGATGACAGTATTGAGGGGATTTACGACACACTCAAACAATGCGCTGTCATATCG 2147 Query 19331 AAGTGGTCCGGGGGTATCGGGATCCACTGCTCGAAT--ATCCGGTCGAGTGGTACACGAA 19388 || |||| |||||||| || | || || | | || || | | || || | Sbjct 2146 AAAGCTGCCGGTGGTATCGGAATAAA-TGTTC-ATTGCATAAGGGCTAAGGGCACTTATA 2089 Query 19389 TCAATGGGACGAACGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACA 19448 | || ||||| || || | | || | ||||| ||| | ||||| |||||||| | Sbjct 2088 TTGCGGGTACGAATGGCATATCAAATGGATTGGTCCCGATGTTGCGCGTGTTCAACAATA 2029 Query 19449 CGGCCAGGTACGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCG 19508 | ||| | |||||| | |||||||| |||||| ||| | ||||| | ||| ||| Sbjct 2028 CTGCCCGATACGTCGATCAGGGGGGGAACAAACGTCCCGGCGCTTTCGCAGTTTACATCG 1969 Query 19509 AGCCATGGCACGCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGG 19568 | || ||||| || || || | || |||||||| || | |||| |||| |||| Sbjct 1968 AACCGTGGCATGCCGATGTATTCGAATTCCTCGACCTTAGGAAGAACACGGGTTCTGAGG 1909 Query 19569 AGATGCGCTGTCGCGACCTCTTC-ACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAG 19627 | || || || ||| | ||| | |||||| |||||||| || | |||||| | Sbjct 1908 AAATACGTGCACGTGACTTGTTCTATGGCCTT-TGGATTCCCGATTTGTTCATGAAACGT 1850 Query 19628 GTTGAGAAGGACGAAGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGAC 19687 ||||| || | |||| ||||||| || ||||||||||| || ||| ||| Sbjct 1849 GTTGAATCCGATGGGATATGGTCATTGATGTGTCCACACGAATGCCCGGGTTTACATGAC 1790 Query 19688 GTCTACGGCGAGGCGTTCAATGAGTTGTACCGGACTTACGTAGCCCAGGGCCGGTTCAAG 19747 | || ||||||| | || || || || |||| | || | | Sbjct 1789 ACGTGGGGTCAGGCGTTTGAGGATTTATATGAGAAATACGAA--AGAGAAAAGAAATACA 1732 Query 19748 AAGGT--GGTCCGGGCCCGGGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCG 19805 || || ||| ||||| | | | ||| | | | || | ||| ||||||| | Sbjct 1731 AACGTCAGGTTCGGGCTCAGTCATTGTGGTATGCCATTGTCGAGGCTCAGATCGAGACGG 1672 Query 19806 GCACACCGTACATGTGCTACAAGGACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCG 19865 |||||||||||||| || || ||| ||| ||||| ||||| | || ||| Sbjct 1671 GCACACCGTACATGGTTTATAAAGACCATTGCAACCGAAAGTCCAATCAACAAAATCTCG 1612 Query 19866 GCGCGATCAAGTCGTCCAACCTGTGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGA 19925 | | || || | || || || || ||||||||| | || ||| || ||||| | Sbjct 1611 GAACCATTAAATGCTCAAATCTATGCACTGAAATCGTTGAATATTCATCTCCCGACGAAA 1552 Query 19926 CTGCCGTGTGTAATCTGGCGTC 19947 ||||||||||||| |||| || Sbjct 1551 TTGCCGTGTGTAATTTGGCTTC 1530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547561803004560