Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq8365 120 3e-22 >seq8365 Length=5311 Score = 120 bits (132), Expect = 3e-22 Identities = 375/568 (66%), Gaps = 12/568 (2%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGAC-TACACGCGTGTCCGTGAGACGTAC 53251 ||||||| ||||| |||| || ||||| | ||| | |||| || | ||||||||| Sbjct 2361 TCATGCGTGTCGCTGTGGGGATACACGGAAATGACATTGACGC-TGCCATTGAGACGTAT 2303 Query 53252 GACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACG 53311 | | ||| | || | ||||| || || | || || |||||||| || || || Sbjct 2302 AATCTCATGTCCGAACGATGGTTTACTCATGCATCACCGACACTGTTCAATGCCGGAACT 2243 Query 53312 AATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGC 53371 ||||| || |||| || || ||| | || | ||||| |||||| || || || Sbjct 2242 CCGCACCCACAATTGTCCAGTTGTTTCTTATTGACCATGAAAGATGACAGTATTGAGGGG 2183 Query 53372 ATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATC 53431 || ||||| || ||||| | || || ||| || || | ||||||||||| || Sbjct 2182 ATTTACGACACACTCAAACAATGCGCTGTCATATCGAAAGCTGCCGGTGGTATCGGAAT- 2124 Query 53432 CACTGCTC-GAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGA 53490 | || || | | | || || ||||| || ||| ||||| ||| | | | Sbjct 2123 AAATGTTCATTGCATAAGGGCTAAGGGCACTTATATTGCGGGTACGAATGGCATATCAAA 2064 Query 53491 TGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGG 53550 |||| | || || ||| | ||||| |||||||| || ||||| |||||| | ||||| || Sbjct 2063 TGGATTGGTCCCGATGTTGCGCGTGTTCAACAATACTGCCCGATACGTCGATCAGGGGGG 2004 Query 53551 TGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGA 53610 || || || | ||||| | ||| |||| |||||||| ||||| | | || Sbjct 2003 GAACAAACGTCCCGGCGCTTTCGCAGTTTACATCGAACCGTGGCATGCCGATGTATTCGA 1944 Query 53611 GTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGTT-T 53668 || ||||| || | ||| |||| || || || || ||| |||||| |||| | Sbjct 1943 ATTCCTCGACCTTAGGAAGAACACGGGTTCTGAGGAAATACG-TGCACGTGACTTGTTCT 1885 Query 53669 ACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAA--GGACGAGGAGTGGT 53726 | || || |||||||| || | |||||| ||| ||| ||| || | | |||| Sbjct 1884 ATGGC-CTTTGGATTCCCGATTTGTTCATG--AAACGTGTTGAATCCGATGGGATATGGT 1828 Query 53727 ACCTGATGTGCCCGAACGAGTGCCCCGG 53754 ||||||| || |||| ||||| || Sbjct 1827 CATTGATGTGTCCACACGAATGCCCGGG 1800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546255300750200