Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_028238.1 Length=188534 Score E Sequences producing significant alignments: (Bits) Value seq3007 86.0 8e-12 >seq3007 Length=6999 Score = 86.0 bits (94), Expect = 8e-12 Identities = 193/282 (68%), Gaps = 10/282 (4%) Strand=Plus/Plus Query 22661 TTTTTCAAATATAAGTTGTGCTACTCTATCGCCCTTA-TTTACGTAAAATACATCCTTAC 22719 ||| ||| | || | |||||| | | ||| | ||| |||| ||| ||| ||| || | Sbjct 6543 TTTCTCACAAATTAATTGTGCAATGCGATC-CTTTTACTTTA--TAATATA-ATCTTTTC 6598 Query 22720 TAAAATTAAATAACAATAT-ACCTATATTTCCCCTGTAATCTCTATCTATCACACCCGCG 22778 ||| |||||||| ||| || || ||| |||| ||||| ||| || ||||| || Sbjct 6599 CAAAGTTAAATAA---TATGACATAAATTACCCCGAAAATCTAGATCAATTACACCAGCT 6655 Query 22779 CCTACATCGATAAAATGATTACATGCCAATCCCGATCTAGGAGATATTCTTCCATATAAT 22838 | ||||| ||||| || || |||| | ||| || | | | ||||||||||| || Sbjct 6656 CAGACATCAATAAAGTGCTTCCATGTAAGTCCAGAACGTGTGCA-ATTCTTCCATAACAT 6714 Query 22839 CCTTCCGGTATATCTATTATAATATCAGTCATTACTAATTGTTTACCCATAGGTTCTATT 22898 |||| || | || ||| || ||||||||| | | |||||| || || | | | Sbjct 6715 CCTTTAGGCAATTCAATTGAAACATCAGTCATAATCATTTGTTTTCCTATTGCCGGAACT 6774 Query 22899 ACGTAATTATACGCGCTATATAGATCATATCCTGCTGAATAT 22940 | |||| ||| || ||||| |||||| ||||| ||| || Sbjct 6775 ATATAATCATATGCAGAATATAAATCATAACCTGCAGAAAAT 6816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 602121848247760