Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq21107 127 1e-24 seq32426 113 3e-20 seq68991 107 1e-18 seq17817 82.4 5e-11 >seq21107 Length=15695 Score = 127 bits (140), Expect = 1e-24 Identities = 171/233 (73%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || || || || | |||||||||||||| ||| || ||||| |||||||| ||| Sbjct 13713 CCTCCCCTGAGGCGAAGAACCAAATGGAGAGTCGACTCTTTCTGAATATTATAATCGGAA 13654 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || ||||||| | |||||| || || || || | | |||||| ||||| || Sbjct 13653 AGAGTCCGTCCGTCTTCCAATTGTTTCCCCGCGAAGATGAGTCTCTGTTGATCCGGGGGA 13594 Query 34600 ACTCCCTCCTTGT-CTGTGATCTTTTGTTTTAACGATAAAATTGTGT-CTTCGCTCTCCA 34657 | || || |||| |||| ||||| |||| | || || | | || | |||| Sbjct 13593 ATCCCTTCTTTGTCCTGT-ATCTTCGCCTTTACATTTTCGATCGTATCCGACGGT-TCCA 13536 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 |||||| || ||||||||||||||||| ||||||||||| || ||||| ||| Sbjct 13535 CTTCCAAAGTGATCGTTTTACCGGTTAATGTTTTCACAAAGATTTGCATTTTG 13483 Score = 116 bits (128), Expect = 2e-21 Identities = 161/220 (73%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| || || || |||||||| ||||||||| || |||||||| || ||||| || Sbjct 14777 AGACGTAAGACTAAGTGGAGAGTCGACTCCTTTTGGATATTATAATCGGACAGTGTACGT 14718 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| |||||||| ||||| || || || ||||| || || || || | ||||| Sbjct 14717 CCATCTTCGAGTTGTTTCCCGGCGAAAATCAATCGCTGCTGATCGGGGGGAATACCCTCT 14658 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCT-TCGCTCTCCACTTCCACGG 34666 |||||| ||| ||| | || || | || || || ||| | || ||||||| | Sbjct 14657 TTGTCT-TGAATTTTGGCCTTTACATTTTCGATGGTATCGCTCGGT-TCAACTTCCAATG 14600 Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || ||||||||||| | ||||| ||||| || ||||| Sbjct 14599 TAATGGTTTTACCGGTGAGTGTTTTGACAAAGATTTGCAT 14560 Score = 113 bits (124), Expect = 3e-20 Identities = 160/220 (73%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| || || || |||||||| |||||||||||| |||||||| || ||||| || Sbjct 13932 AGACGTAAGACTAAGTGGAGAGTCGACTCCTTTTGAATATTATAATCGGACAGTGTACGT 13873 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| |||||||| ||||| || || || ||||| || || || || | ||||| Sbjct 13872 CCATCTTCGAGTTGTTTTCCGGCGAAAATCAATCGCTGCTGATCGGGGGGAATACCCTCT 13813 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCACTTCCACGG 34666 || ||| ||| ||| | ||||| | ||| || || ||| ||| ||||||| | Sbjct 13812 TTATCT-TGAATTTTGGCCTTAACATTCTCAATGGTATCGCTCG-GCTCAACTTCCAATG 13755 Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || ||||| ||||| | || || || || || ||||| Sbjct 13754 TAATGGTTTTGCCGGTGAGAGTCTTGACGAAGATTTGCAT 13715 Score = 104 bits (114), Expect = 1e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||| || | || ||||| ||||||||||| ||||| || || || || || Sbjct 15005 AGACGCAAGACGAGGTGAAGAGTCGATTCCTTTTGAATATTATAGTCCGAGAGAGTACGG 14946 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || | |||||| |||||||| || | |||||| || ||||| || | ||||| Sbjct 14945 CCGTCCTCTAATTGTTTTCCGGCAAAGATCAGACGCTGCTGATCCGGAGGAATCCCCTCT 14886 Query 34609 TTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || ||| ||| ||| | ||| ||| | || || || | ||||| |||| || Sbjct 14885 TTATCT-TGAATTTTCGCTTTCACGTTTTCGATGGTATCAGAGGGTTCCACCTCCAATGT 14827 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || ||||||||||| | || || || || |||||||| Sbjct 14826 GATGGTTTTACCGGTGAGAGTCTTGACGAAGATCTGCAT 14788 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || || |||||||| || ||||||||||| ||| || ||||| || ||||| Sbjct 14169 CCTCCCCTGAGACGCAATACTAAATGGAGAGTCGACTCTTTCTGAATATTGTAATCGCTG 14110 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||| || | |||||| || || || || | | |||||| ||||| || Sbjct 14109 AGAGTCCGTCCGTCCTCCAATTGTTTTCCCGCGAAAATAAGTCTCTGTTGATCCGGGGGA 14050 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | |||||| || || ||| || | ||||| | ||| || || | ||||| Sbjct 14049 ATTCCCTCTTTATC-CTGAATCTTGGCCTTAACATTCTCAATGGTATCGGAGGGTTCCAC 13991 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || ||||| ||||| | || || || || |||||||| Sbjct 13990 TTCCAAAGTGATGGTTTTGCCGGTGAGAGTCTTAACGAAGATCTGCAT 13943 Score = 84.2 bits (92), Expect = 1e-11 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| |||| |||||||||||||| ||| || ||||| || ||||| Sbjct 14397 CCCCCGCGAAGTCGCAGTACCAAATGGAGAGTCGACTCTTTCTGAATATTGTAATCGCTG 14338 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||| || | |||||| || ||||| || || ||||| || || || || Sbjct 14337 AGAGTCCGTCCGTCCTCCAATTGTTTCCCCGCAAAAATCAACCGCTGCTGATCGGGGGGA 14278 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTC-TTCGCTCTCCA 34657 | |||||| |||||| ||| || | |||||| | || || || || | |||| Sbjct 14277 ATTCCCTCTTTGTCT-TGAATCTTAGCCTTAACGTTTTCGATAGTATCAGACGGT-TCCA 14220 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | |||| || || || || ||||| | || || || || || ||||| Sbjct 14219 CCTCCAATGTGATGGTCTTTCCGGTGAGTGTCTTGACGAAGATTTGCAT 14171 >seq32426 Length=2656 Score = 113 bits (124), Expect = 3e-20 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||| || | || ||||| ||||||||||| || || || || || || || Sbjct 216 AGACGCAAGACGAGGTGAAGAGTCGATTCCTTTTGAATATTGTAGTCCGAGAGAGTACGG 275 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || | |||||| |||||||| || | ||||||||| ||||| || | ||||| Sbjct 276 CCGTCCTCCAATTGTTTTCCGGCAAAGATCAGACGCTGTTGATCCGGAGGAATCCCCTCT 335 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || ||| ||| ||| | ||| || | ||| |||||| | |||||||||| || Sbjct 336 TTATCT-TGAATTTTGGCTTTGACATTCTCAATGGTGTCTGAGGGTTCCACTTCCAAAGT 394 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || ||||| ||| | | |||||||| || || ||||| Sbjct 395 GATAGTTTTGCCGATGAGTGTTTTCACGAATATTTGCAT 433 Score = 95.1 bits (104), Expect = 8e-15 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| ||||| || |||||||| |||||||||||| ||||||| || ||||| || Sbjct 443 AGACGTAACACTAAGTGGAGAGTCGACTCCTTTTGAATATTATAATTGGACAGTGTACGT 502 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| |||||||| |||| || || || ||||| || || || || | ||||| Sbjct 503 CCATCTTCGAGTTGTTTCCCGGAGAAGATCAATCGCTGCTGATCGGGAGGAATACCCTCT 562 Query 34609 TTGTC 34613 ||||| Sbjct 563 TTGTC 567 >seq68991 Length=328 Score = 107 bits (118), Expect = 1e-18 Identities = 111/144 (77%), Gaps = 1/144 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| ||||||||||| || || ||||||||||||||||||||| ||||| || Sbjct 182 AGACGTAACACCAAATGAAGTGTCGACTCCTTTTGAATGTTATAATCACTGAGTGTACGT 241 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | |||||| |||||||| || | ||||||||| ||||| || | ||||| Sbjct 242 CCATCTTCCAATTGTTTCCCGGCAAAGATCAGACGCTGTTGATCCGGGGGAATACCCTCT 301 Query 34609 TTGTCTGTGATCTTTTGTTTTAAC 34632 || ||| ||| ||| | ||| || Sbjct 302 TTATCT-TGAATTTTAGCTTTGAC 324 >seq17817 Length=30685 Score = 82.4 bits (90), Expect = 5e-11 Identities = 137/193 (71%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34519 TTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATT 34578 ||||| || |||||||| ||||| || || ||||||| | |||||| || ||||| || Sbjct 811 TTTTGTATATTATAATCGGAAAGAGTCCGTCCGTCTTCCAATTGTTTCCCCGCAAAAATG 752 Query 34579 AAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTC-TGTGATCTTTTGTTTTAACGATAA 34637 | | |||||| ||||| || | || || ||||| ||| ||||| ||||| Sbjct 751 AGTCTCTGTTGATCCGGGGGAATCCCTTCTTTGTCCTGT-ATCTTCGCTTTTACATTCTC 693 Query 34638 AATTGTGTCT-TCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAA 34696 || || || ||| | || || || | || || || || || ||||| |||||||||| Sbjct 692 TATCGTATCACTCGGT-TCGACCTCTAATGTAATGGTCTTTCCCGTTAATGTTTTCACAA 634 Query 34697 AAATCTGCATGTT 34709 | || ||||| || Sbjct 633 AGATTTGCATTTT 621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314190870360617