Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq32426 161 9e-35 seq21107 149 5e-31 seq68991 122 8e-23 seq17817 105 6e-18 seq14450 87.8 2e-12 seq21020 84.2 2e-11 >seq32426 Length=2656 Score = 161 bits (178), Expect = 9e-35 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| ||||| || ||||| || | |||||| |||| ||| | ||||||||||| || Sbjct 433 ATGCAAATATTCGTGAAAACACTCATCGGCAAAACTATCACTTTGGAAGTGGAACCCTCA 374 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| |||||| ||||||||||| ||||| || || || || |||||| Sbjct 373 GACACCATTGAGAATGTCAAAGCCAAAATTCAAGATAAAGAGGGGATTCCTCCGGATCAA 314 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||| ||||||||||| ||| | || | || || ||||| Sbjct 313 CAGCGTCTGATCTTTGCCGGAAAACAATTGGAGGACGGCCGTACTCTCTCGGACTACAAT 254 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||||||||| ||||| | || | || |||||| |||| || || Sbjct 253 ATTCAAAAGGAATCGACTCTTCACCTCGTCTTGCGTCTGCGCGGAGG 207 Score = 105 bits (116), Expect = 6e-18 Identities = 173/248 (70%), Gaps = 6/248 (2%) Strand=Plus/Minus Query 26966 TAAATTTTTTAATTTATACGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTAT 27025 ||| |||||| | | ||| |||| || || | ||||| || ||||| || |||| Sbjct 678 TAATTTTTTTTAATGATA----ATGCCAATCCTTTTCAAAACACTCACCGGTAAAGCTAT 623 Query 27026 TACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAA 27085 ||| | ||||| || ||| ||| | || || | || || ||||| || ||||| Sbjct 622 TACATTGGAAGTTGAGCCGAGCGATACCATCGAAAATGTAAAGGCCAAAATACAGGACAA 563 Query 27086 AGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAG 27145 ||| || || || |||||||| ||||| || || | | |||| |||||| | ||||| | Sbjct 562 AGAGGGTATTCCTCCCGATCAGCAGCGATTGATCTTCTCCGGGAAACAACTCGAAGATGG 503 Query 27146 TTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTT 27205 || | ||| |||| || ||||||||||||||||| | || || || || ||| | Sbjct 502 ACGTACACTGTCCAATTATAATATTCAAAAGGAGTCGACTCTCCACTTAGTGTTACGTCT 443 Query 27206 --GCGGGG 27211 |||||| Sbjct 442 CCGCGGGG 435 >seq21107 Length=15695 Score = 149 bits (164), Expect = 5e-31 Identities = 175/236 (74%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 26964 AATAAATTTTTTAATTTATACGCCA--TGCAGATATTTGTAAAAACTCTGACCGGCAAGT 27021 |||| ||| | |||||| || || | |||| || ||||| ||||| | ||||| || Sbjct 13461 AATATATTCTGTAATTTTTAGGCAAAATGCAAATCTTTGTGAAAACATTAACCGGTAAAA 13520 Query 27022 CTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAG 27081 | || ||| | |||||||||||||| || |||| || | || || || || || | Sbjct 13521 CGATCACTTTGGAAGTGGAACCGTCGGATACGATCGAAAATGTAAAGGCGAAGATACAGG 13580 Query 27082 ACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAG 27141 |||||||||| || || || ||||||||| | | || | ||| || ||||||||||||| Sbjct 13581 ACAAAGAAGGGATTCCCCCGGATCAACAGAGACTCATCTTCGCGGGGAAACAATTGGAAG 13640 Query 27142 ACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTT 27197 || | ||| |||||||||| || ||||| || |||||||| | ||||||||| Sbjct 13641 ACGGACGGACTCTTTCCGATTATAATATTCAGAAAGAGTCGACTCTCCATTTGGTT 13696 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||||| |||||||| | || ||| | ||||||||||| ||| Sbjct 13943 ATGCAGATCTTCGTTAAGACTCTCACCGGCAAAACCATCACTTTGGAAGTGGAACCCTCC 14002 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || || || ||||| || ||||| || || || || |||||| Sbjct 14003 GATACCATTGAGAATGTTAAGGCCAAGATTCAGGATAAAGAGGGAATTCCCCCGGATCAA 14062 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | ||| || ||||||||||| ||| | ||| | ||||||||| Sbjct 14063 CAGAGACTTATTTTCGCGGGAAAACAATTGGAGGACGGACGGACTCTCAGCGATTACAAT 14122 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| || |||||||| | ||||| || |||||| | |||| || || Sbjct 14123 ATTCAGAAAGAGTCGACTCTCCATTTAGTATTGCGTCTCAGGGGAGGTAT 14172 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || ||||| |||||||| | ||||| | ||||| || ||| | Sbjct 13715 ATGCAAATCTTCGTCAAGACTCTCACCGGCAAAACCATTACATTGGAAGTTGAGCCGAGC 13774 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || || ||||||||||| ||||| || || || |||||||| Sbjct 13775 GATACCATTGAGAATGTTAAGGCCAAAATTCAAGATAAAGAGGGTATTCCCCCCGATCAG 13834 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | |||||| |||||| | ||||| | || | |||||||| || Sbjct 13835 CAGCGATTGATTTTCGCCGGAAAACAACTCGAAGATGGACGTACACTGTCCGATTATAAT 13894 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||||||||||| | || || || || ||| | || || || || Sbjct 13895 ATTCAAAAGGAGTCGACTCTCCACTTAGTCTTACGTCTCCGCGGGGGGAT 13944 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| ||||| || ||||| || | ||||| | ||||| |||||| | Sbjct 14560 ATGCAAATCTTTGTCAAAACACTCACCGGTAAAACCATTACATTGGAAGTTGAACCGAGC 14619 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || || ||||||||||||||||| || || || |||||||| Sbjct 14620 GATACCATCGAAAATGTAAAGGCCAAAATTCAAGACAAAGAGGGTATTCCCCCCGATCAG 14679 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | |||||| |||||| | ||||| | || | |||||||| || Sbjct 14680 CAGCGATTGATTTTCGCCGGGAAACAACTCGAAGATGGACGTACACTGTCCGATTATAAT 14739 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || |||||||||||||| | || || || || ||| | || || || || Sbjct 14740 ATCCAAAAGGAGTCGACTCTCCACTTAGTCTTACGTCTCCGCGGGGGGAT 14789 Score = 125 bits (138), Expect = 6e-24 Identities = 164/226 (73%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || || ||||| ||| | || || | || ||||||||||| Sbjct 14171 ATGCAAATCTTCGTCAAGACACTCACCGGAAAGACCATCACATTGGAGGTGGAACCGTCT 14230 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || || || |||||||||||||| || || || |||||||| Sbjct 14231 GATACTATCGAAAACGTTAAGGCTAAGATTCAAGACAAAGAGGGAATTCCCCCCGATCAG 14290 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | || || ||||||||||| ||| | ||| | ||||||||| Sbjct 14291 CAGCGGTTGATTTTTGCGGGGAAACAATTGGAGGACGGACGGACTCTCAGCGATTACAAT 14350 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCG--TTTGCGGGG 27211 ||||| || |||||||| | |||||||| |||| || |||||| Sbjct 14351 ATTCAGAAAGAGTCGACTCTCCATTTGGTACTGCGACTTCGCGGGG 14396 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||||| ||||| || | || || | || |||||||| || Sbjct 14788 ATGCAGATCTTCGTCAAGACTCTCACCGGTAAAACCATCACATTGGAGGTGGAACCCTCT 14847 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || ||| ||||||||||| ||||| || || || || ||||| Sbjct 14848 GATACCATCGAAAACGTGAAAGCGAAAATTCAAGATAAAGAGGGGATTCCTCCGGATCAG 14907 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||| |||||||| || ||| | || | || || || || Sbjct 14908 CAGCGTCTGATCTTTGCCGGAAAACAATTAGAGGACGGCCGTACTCTCTCGGACTATAAT 14967 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||||||||| ||||| | || | || |||||| |||| || || Sbjct 14968 ATTCAAAAGGAATCGACTCTTCACCTCGTCTTGCGTCTGCGCGGAGG 15014 >seq68991 Length=328 Score = 122 bits (134), Expect = 8e-23 Identities = 120/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| ||||| || |||||||| ||||| || | ||||| | ||||| ||||| ||| Sbjct 171 ATGCAAATATTCGTGAAAACTCTCACCGGTAAAACCATTACATTGGAAGTCGAACCCTCC 112 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | |||||| ||||| || ||||||||||| || || || |||||| Sbjct 111 GATACTATCGAAAATGTCAAAGCGAAAATACAGGACAAAGAAGGGATTCCCCCGGATCAA 52 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGA 27142 |||||| | || | ||||| |||||||||||||| Sbjct 51 CAGCGTCTGATCTTTGCCGGAAAACAATTGGAAGA 17 Score = 109 bits (120), Expect = 5e-19 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 27063 GTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATAC 27122 |||||| ||||||||||| ||||| || || || || |||||||||||| | || | Sbjct 324 GTCAAAGCTAAAATTCAAGATAAAGAGGGTATTCCCCCGGATCAACAGCGTCTGATCTTT 265 Query 27123 GCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCG 27182 ||||| |||||||||||||| | || | ||||| |||||||||||||||||| Sbjct 264 GCCGGGAAACAATTGGAAGATGGACGTACACTCAGTGATTATAACATTCAAAAGGAGTCG 205 Query 27183 ACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || | |||||||| || ||| | || || || || Sbjct 204 ACACTTCATTTGGTGTTACGTCTCCGCGGGGGGAT 170 >seq17817 Length=30685 Score = 105 bits (116), Expect = 6e-18 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| ||||| | || || ||| | ||||| | || || |||||| Sbjct 624 ATGCAAATCTTTGTGAAAACATTAACGGGAAAGACCATTACATTAGAGGTCGAACCGAGT 683 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || |||| |||| || ||| || || || ||||||||||| || || || |||||| Sbjct 684 GATACGATAGAGAATGTAAAAGCGAAGATACAGGACAAAGAAGGGATTCCCCCGGATCAA 743 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || || ||||||||||||||| | ||| |||||||||| || Sbjct 744 CAGAGACTCATTTTTGCGGGGAAACAATTGGAAGACGGACGGACTCTTTCCGATTATAAT 803 Query 27168 ATTCAAAA 27175 || ||||| Sbjct 804 ATACAAAA 811 >seq14450 Length=5806 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || | || || ||| | || ||| | |||||||||||||| Sbjct 5468 ATGCAAATTTTCGTTAAGACATTAACGGGAAAGACCATCACTTTGGAAGTGGAACCGTCT 5409 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || || || || || || ||||| || || || || |||||| Sbjct 5408 GATACCATTGAGAATGTTAAGGCGAAGATACAGGATAAAGAGGGAATTCCCCCGGATCAA 5349 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGAC 27143 ||| | | || | ||| || ||||||||||||||| Sbjct 5348 CAGAGACTCATTTTCGCGGGGAAACAATTGGAAGAC 5313 >seq21020 Length=2817 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 27003 AAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATG 27062 ||||| | ||||| || | || ||| | ||||| | |||||| || |||| | | Sbjct 2816 AAAACATTAACCGGTAAAACGATCACTTTGGAAGTTGTACCGTCGGATACGATCGGAAAT 2757 Query 27063 GTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATAC 27122 || || || || || ||||||||||| || || || ||||||||| | | | | Sbjct 2756 GTAAAGGCGAAGATACAGGACAAAGAAGGGATTCCCCCGGATCAACAGAAACTCACCTTC 2697 Query 27123 GCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCG 27182 | || |||||||||| |||| | ||| |||||||||| || ||||| || ||||| Sbjct 2696 GATGGGGAACAATTGGAGAACAGATGGACTCTTTCCGATTATAATATTCAGAAAAAGTCG 2637 Query 27183 ACCTTACATTTGGT 27196 || | ||||| || Sbjct 2636 ACTCTCCATTTAGT 2623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434154851820480