Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_028945.1 Length=206713 Score E Sequences producing significant alignments: (Bits) Value seq3094 96.9 5e-15 seq3095 91.5 2e-13 >seq3094 Length=4030 Score = 96.9 bits (106), Expect = 5e-15 Identities = 131/180 (73%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 53677 CGACCATCATCCCAACCACGGATGAATTCGCCGCGAAGATCGGGAAGGTTAAACGTCGTG 53736 || |||| | ||||||||| || ||||| ||||| ||||| || || || || || || Sbjct 2240 CGCCCATTACTCCAACCACGAATAAATTCACCGCGTAGATCAGGCAGTTTGAATGTTTTG 2181 Query 53737 GAGCCGTCACCAGCACCAAACGTCGTACCAATAGCCGCATATAGCGCCGCATAGGTCGTA 53796 ||| || ||| ||||| || ||||||||||| | |||| | ||||| | ||| Sbjct 2180 CTGCCATCTCCATTGCCAAAGGTTGTACCAATAGCGGTGAATAGATCAGCATACATGGTA 2121 Query 53797 CGCGAAACTGCCGCACCGTTTGCCTTCAAGA-ATCCGGAAGGAGCACTGTTTCGGGCAAA 53855 || || || ||| | || || || |||||| | || | ||| ||| ||||||||||||| Sbjct 2120 CGGGAGACCGCCTCGCCATTCGC-TTCAAGCCAACCAGTAGGTGCAGTGTTTCGGGCAAA 2062 >seq3095 Length=5575 Score = 91.5 bits (100), Expect = 2e-13 Identities = 128/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 53680 CCATCATCCCAACCACGGATGAATTCGCCGCGAAGATCGGGAAGGTTAAACGTCGTGGAG 53739 |||| | ||||||||| || ||||| ||||| ||||| || || || || || || | Sbjct 3246 CCATTACTCCAACCACGAATAAATTCACCGCGTAGATCAGGCAGTTTGAATGTTTTGCTG 3187 Query 53740 CCGTCACCAGCACCAAACGTCGTACCAATAGCCGCATATAGCGCCGCATAGGTCGTACGC 53799 || || ||| ||||| || ||||||||||| | |||| | ||||| | ||||| Sbjct 3186 CCATCTCCATTGCCAAAAGTTGTACCAATAGCGGTGAATAGATCAGCATACATGGTACGA 3127 Query 53800 GAAACTGCCGCACCGTTTGCCTTCAAGA-ATCCGGAAGGAGCACTGTTTCGGGCAAA 53855 || || | | | || || || |||||| | || | ||| ||| ||||||||||||| Sbjct 3126 GAGACCGTCTCGCCATTCGC-TTCAAGCCAACCTGTAGGTGCAGTGTTTCGGGCAAA 3071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 660192519352920