Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq68991 95.1 9e-15 seq17817 89.7 4e-13 >seq68991 Length=328 Score = 95.1 bits (104), Expect = 9e-15 Identities = 120/163 (74%), Gaps = 4/163 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || ||||||||||| || || ||| |||||| | || |||||| | || Sbjct 171 ATGCAAATATTCGTGAAAACTCTCACCGGTAAAACCATTACATTGGAAGTCGAACCCTCC 112 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| |||||| |||||| ||||||||||| |||| ||| | Sbjct 111 GATACTATCGAAAAT--GTCAAAGCGAAAATACAGGACAAAGAAGGGATTCCCCCGGATC 54 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACG 27950 | || || | || |||||||||||||||||||| || | ||| Sbjct 53 AACAGCGTCTGATCTTTGCCGGAAAACAATTGGAAGATGGACG 11 >seq17817 Length=30685 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/195 (71%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 ||||||||||| ||||||||||| | || || || |||||| | || |||||| Sbjct 621 AAAATGCAAATCTTTGTGAAAACATTAACGGGAAAGACCATTACATTAGAGGTCGAACCG 680 Query 27847 ACCGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 | || |||| | ||| || ||| || ||| ||||||||||| |||| || Sbjct 681 AGTGATACGATAGAGAAT--GTAAAAGCGAAGATACAGGACAAAGAAGGGATTCCCCCGG 738 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | || || | | |||||||| || ||||||||||| |||| ||| | | ||||||| Sbjct 739 ATCAACAGAGACTCATTTTTGCGGGGAAACAATTGGAAGACGGACGGACTCTTTCCGATT 798 Query 27965 ACAACATCCAAAAAG 27979 | || || ||||||| Sbjct 799 ATAATATACAAAAAG 813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355253262434223