Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq21107 136 9e-27 seq14450 114 3e-20 seq17817 109 1e-18 seq32426 104 5e-17 seq68991 95.1 3e-14 >seq21107 Length=15695 Score = 136 bits (150), Expect = 9e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 210905 GACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTC 210964 ||| ||||||||||| || || ||||| || ||||| |||| || || | || || || Sbjct 14997 GACGAGGTGAAGAGTCGATTCCTTTTGAATATTATAGTCCGAGAGAGTACGGCCGTCCTC 14938 Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTG 211024 | || || || || ||||| || || || || || ||||||| || || || || || Sbjct 14937 TAATTGTTTTCCGGCAAAGATCAGACGCTGCTGATCCGGAGGAATCCCCTCTTTATCTTG 14878 Query 211025 GATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTT 211084 || || |||||||||||||||||| |||||| ||| ||||| | ||||| || || Sbjct 14877 AATTTTCGCTTTCACGTTTTCGATGGTATCAGAGGGTTCCACCTCCAATGTGATGGTTTT 14818 Query 211085 TCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||||||||| || || | |||||| Sbjct 14817 ACCGGTGAGAGTCTTGACGAAGATCTGCAT 14788 Score = 120 bits (132), Expect = 7e-22 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||||| || || | || ||||| |||||||| || || || ||||| || ||| Sbjct 14391 CGAAGTCGCAGTACCAAATGGAGAGTCGACTCTTTCTGAATATTGTAATCGCTGAGAGTC 14332 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | ||| || |||| || || || || || || | || || || || || |||| ||| Sbjct 14331 CGTCCGTCCTCCAATTGTTTCCCCGCAAAAATCAACCGCTGCTGATCGGGGGGAATTCCC 14272 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 || ||||| || ||||| || ||||||||||| || ||||| ||| ||||| | Sbjct 14271 TCTTTGTCTTGAATCTTAGCCTTAACGTTTTCGATAGTATCAGACGGTTCCACCTCCAAT 14212 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| |||||||| ||||| ||||| || || | ||||| Sbjct 14211 GTGATGGTCTTTCCGGTGAGTGTCTTGACGAAGATTTGCAT 14171 Score = 118 bits (130), Expect = 2e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || ||||| |||||||| || || || ||||| || |||| ||| || |||| || Sbjct 14145 TGGAGAGTCGACTCTTTCTGAATATTGTAATCGCTGAGAGTCCGTCCGTCCTCCAATTGT 14086 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || ||||| ||||| | ||||| || || |||| ||| || || ||||| ||||| Sbjct 14085 TTTCCCGCGAAAATAAGTCTCTGTTGATCCGGGGGAATTCCCTCTTTATCCTGAATCTTG 14026 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || || || || ||||| || ||| ||| || || | |||||| || || || ||| Sbjct 14025 GCCTTAACATTCTCAATGGTATCGGAGGGTTCCACTTCCAAAGTGATGGTTTTGCCGGTG 13966 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 |||||||| || || | |||||| Sbjct 13965 AGAGTCTTAACGAAGATCTGCAT 13943 Score = 107 bits (118), Expect = 4e-18 Identities = 159/224 (71%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 || || | || ||| | ||| ||||| ||||| |||||||| |||||||| | || || Sbjct 14780 CGGAGACGTAAGACTAAGTGGAGAGTCGACTCCTTTTGGATATTATAATCGGACAGTGTA 14721 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | ||||||||| || || || || ||||| || | || || || || || |||| || Sbjct 14720 CGTCCATCTTCGAGTTGTTTCCCGGCGAAAATCAATCGCTGCTGATCGGGGGGAATACCC 14661 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCG 211070 || ||||| || || || || || ||||||||||| || ||| |||||| || Sbjct 14660 TCTTTGTCTTGAATTTTGGCCTTTACATTTTCGATGGTATC---GCTCGGTTCAACTTCC 14604 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 | || || || || || ||||| || || ||||| | ||||| Sbjct 14603 AATGTAATGGTTTTACCGGTGAGTGTTTTGACAAAGATTTGCAT 14560 Score = 89.7 bits (98), Expect = 1e-12 Identities = 155/224 (69%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 || || | || ||| | ||| ||||| ||||| ||||| || |||||||| | || || Sbjct 13935 CGGAGACGTAAGACTAAGTGGAGAGTCGACTCCTTTTGAATATTATAATCGGACAGTGTA 13876 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | ||||||||| || || || || ||||| || | || || || || || |||| || Sbjct 13875 CGTCCATCTTCGAGTTGTTTTCCGGCGAAAATCAATCGCTGCTGATCGGGGGGAATACCC 13816 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCG 211070 || || || || || || || || || || ||||| || ||| ||||| || Sbjct 13815 TCTTTATCTTGAATTTTGGCCTTAACATTCTCAATGGTATC---GCTCGGCTCAACTTCC 13759 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 | || || || || || ||||||||||| || || | ||||| Sbjct 13758 AATGTAATGGTTTTGCCGGTGAGAGTCTTGACGAAGATTTGCAT 13715 >seq14450 Length=5806 Score = 114 bits (126), Expect = 3e-20 Identities = 141/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 210925 CTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGA 210984 ||||||| || |||||||| || |||| ||| ||||||| || || || ||||| | Sbjct 5279 CTTTTTGTATATTATAATCACTCAGAGTCCGTCCGTCTTCCAATTGTTTCCCCGCGAAAA 5338 Query 210985 TAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTT 211044 | || | ||||| || || |||| ||| || || ||||| ||||| || || || | Sbjct 5339 TGAGTCTCTGTTGATCCGGGGGAATTCCCTCTTTATCCTGTATCTTCGCCTTAACATTCT 5398 Query 211045 CGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAA 211104 | ||||| ||||| ||| || || | |||||| ||||||||||| | ||||| || | Sbjct 5399 CAATGGTATCAGACGGTTCCACTTCCAAAGTGATGGTCTTTCCCGTTAATGTCTTAACGA 5458 Query 211105 ACACCTGCATTTT 211117 | | |||||||| Sbjct 5459 AAATTTGCATTTT 5471 >seq17817 Length=30685 Score = 109 bits (120), Expect = 1e-18 Identities = 140/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 210925 CTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGA 210984 ||||||| || |||||||| | ||| |||| ||| ||||||| || || || || || | Sbjct 813 CTTTTTGTATATTATAATCGGAAAGAGTCCGTCCGTCTTCCAATTGTTTCCCCGCAAAAA 754 Query 210985 TAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTT 211044 | || | ||||| || || |||| ||||| |||||||| ||||| ||| || || | Sbjct 753 TGAGTCTCTGTTGATCCGGGGGAATCCCTTCTTTGTCCTGTATCTTCGCTTTTACATTCT 694 Query 211045 CGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAA 211104 | || || ||| ||| ||||| | || || ||||||||||| | || || |||| Sbjct 693 CTATCGTATCACTCGGTTCGACCTCTAATGTAATGGTCTTTCCCGTTAATGTTTTCACAA 634 Query 211105 ACACCTGCATTTT 211117 | | |||||||| Sbjct 633 AGATTTGCATTTT 621 >seq32426 Length=2656 Score = 104 bits (114), Expect = 5e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 210905 GACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTC 210964 ||| ||||||||||| || || ||||| || || || |||| || || | || || || Sbjct 224 GACGAGGTGAAGAGTCGATTCCTTTTGAATATTGTAGTCCGAGAGAGTACGGCCGTCCTC 283 Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTG 211024 || || || || || ||||| || || ||||| || ||||||| || || || || || Sbjct 284 CAATTGTTTTCCGGCAAAGATCAGACGCTGTTGATCCGGAGGAATCCCCTCTTTATCTTG 343 Query 211025 GATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTT 211084 || || ||| || || || |||||||| ||| ||| || || | |||||| || || Sbjct 344 AATTTTGGCTTTGACATTCTCAATGGTGTCTGAGGGTTCCACTTCCAAAGTGATAGTTTT 403 Query 211085 TCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || |||| || || || || | ||||| Sbjct 404 GCCGATGAGTGTTTTCACGAATATTTGCAT 433 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 ||| ||||| ||||| ||||| || ||||||| | || || | ||||||||| || || Sbjct 457 GTGGAGAGTCGACTCCTTTTGAATATTATAATTGGACAGTGTACGTCCATCTTCGAGTTG 516 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 || || | |||||| | || || || || ||||||| || || |||||||| || || Sbjct 517 TTTCCCGGAGAAGATCAATCGCTGCTGATCGGGAGGAATACCCTCTTTGTCCTGTATTTT 576 Query 211031 TTGTTTCACGTTTTCGATGGTGTC 211054 || || ||||||||||| || Sbjct 577 GGCCTTTACATTTTCGATGGTATC 600 >seq68991 Length=328 Score = 95.1 bits (104), Expect = 3e-14 Identities = 121/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 210948 AGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGA 211007 || || | ||||||||||| || || || || ||||| || || ||||| || || ||| Sbjct 5 AGTGTACGTCCATCTTCCAATTGTTTTCCGGCAAAGATCAGACGCTGTTGATCCGGGGGA 64 Query 211008 ACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACC 211067 | ||||| |||||||| || || ||| || |||||||| || || ||| ||| || Sbjct 65 ATCCCTTCTTTGTCCTGTATTTTCGCTTTGACATTTTCGATAGTATCGGAGGGTTCGACT 124 Query 211068 TCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || | || || || || || |||||||| || || || | ||||| Sbjct 125 TCCAATGTAATGGTTTTACCGGTGAGAGTTTTCACGAATATTTGCAT 171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1157066102715885