Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq32426 111 1e-19 seq21107 109 4e-19 seq14450 104 2e-17 seq68991 102 5e-17 seq17817 96.9 2e-15 >seq32426 Length=2656 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| ||||| |||| || ||||| |||||| | ||||| || || | Sbjct 433 ATGCAAATATTCGTGAAAACACTCATCGGCAAAACTATCACTTTGGAAGTGGAACCCTCA 374 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | ||| | |||| || || ||||| || | || || ||||| Sbjct 373 GACACCATTGAGAATGTCAAAGCCAAAA-TTCAAGATAAAGAGGGGATTCCTCCGGATCA 315 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||| | || |||||||| |||||| |||| |||| || ||| | || ||||| Sbjct 314 ACAGCGTCTGATCTTTGCCGGAAAACAATTGGAGGACGGCCGTACTCTCTCGGACTACAA 255 Query 23790 CATACAAAAAGAGTCCAC 23807 || ||||| || || || Sbjct 254 TATTCAAAAGGAATCGAC 237 >seq21107 Length=15695 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||||| || || || ||||| | || || |||||||||||| | ||||| || | Sbjct 13484 AAAATGCAAATCTTTGTGAAAACATTAACCGGTAAAACGATCACTTTGGAAGTGGAACCG 13543 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| || | |||| |||| || || ||||||||||| | || || ||| Sbjct 13544 TCGGATACGATCGAAAATGTAAAGGCGAAGATACAGGACAAAGAAGGGATTCCCCCGGAT 13603 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 |||||| | | || || || || |||||| ||||||||| ||| ||| | |||||| Sbjct 13604 CAACAGAGACTCATCTTCGCGGGGAAACAATTGGAAGACGGACGGACTCTTTCCGATTAT 13663 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTT 23820 || || || |||||||| || | ||||| ||| Sbjct 13664 AATATTCAGAAAGAGTCGACTCTCCATTTGGTT 13696 >seq14450 Length=5806 Score = 104 bits (114), Expect = 2e-17 Identities = 141/194 (73%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||||| ||||||||||| || | |||||||| || |||||| | ||||| || | Sbjct 5471 AAAATGCAAATTTTCGTTAAGACATTAACGGGAAAGACCATCACTTTGGAAGTGGAACCG 5412 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | || || |||| ||| |||| | || || || ||||| || | || || || Sbjct 5411 TCTGATACCATTGAGAATGTTAAGGC-GAAGATACAGGATAAAGAGGGAATTCCCCCGGA 5353 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||||||| | | || || || || |||||| ||||||||| ||| ||| | | ||||| Sbjct 5352 TCAACAGAGACTCATTTTCGCGGGGAAACAATTGGAAGACGGACGGACTCTGAGTGATTA 5293 Query 23787 CAACATACAAAAAG 23800 || |||||||||| Sbjct 5292 TAATATACAAAAAG 5279 >seq68991 Length=328 Score = 102 bits (112), Expect = 5e-17 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| ||||| ||||| || ||||| || || | ||||| || || | Sbjct 171 ATGCAAATATTCGTGAAAACTCTCACCGGTAAAACCATTACATTGGAAGTCGAACCCTCC 112 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| | |||| | ||| ||||| ||||||||||| | || || |||||| Sbjct 111 GATACTATCGAAAATGTCAAAGCGAAAATACAGGACAAAGAAGGGATTCCCCCGGATCAA 52 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCAC 23774 |||||| | || |||||||| |||||| ||||||| | ||| || Sbjct 51 CAGCGTCTGATCTTTGCCGGAAAACAATTGGAAGATGGACGTAC 8 Score = 98.7 bits (108), Expect = 7e-16 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 23695 AAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAA 23754 |||||| || ||||| ||| | || || |||||||||||| | || |||||||| ||| Sbjct 315 AAAATTCAAGATAAAGAGGGTATTCCCCCGGATCAACAGCGTCTGATCTTTGCCGGGAAA 256 Query 23755 CAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACAT 23814 ||| ||||||| | ||| || | | ||||| ||||| ||||| ||||| ||| | ||| Sbjct 255 CAATTGGAAGATGGACGTACACTCAGTGATTATAACATTCAAAAGGAGTCGACACTTCAT 196 Query 23815 TTAGTTTTA 23823 || || ||| Sbjct 195 TTGGTGTTA 187 >seq17817 Length=30685 Score = 96.9 bits (106), Expect = 2e-15 Identities = 145/205 (71%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 23596 AATTAATTACTTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTC 23655 ||||||| | | |||||||| || || || ||||| | |||||||| || || || | Sbjct 610 AATTAAT-ATTAAAAATGCAAATCTTTGTGAAAACATTAACGGGAAAGACCATTACATTA 668 Query 23656 GAAGTTGACTCCACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGT 23715 || || || | | || || | || | ||||| || || ||||||||||| Sbjct 669 GAGGTCGAACCGAGTGATACGATAGAGAATGTAAAAGCGAAGATACAGGACAAAGAAGGG 728 Query 23716 GTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACT 23775 | || || ||||||||| | | || ||||| || |||||| ||||||||| ||| ||| Sbjct 729 ATTCCCCCGGATCAACAGAGACTCATTTTTGCGGGGAAACAATTGGAAGACGGACGGACT 788 Query 23776 TTAGGCGATTACAACATACAAAAAG 23800 | |||||| || |||||||||| Sbjct 789 CTTTCCGATTATAATATACAAAAAG 813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337431021468092