Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq21474 140 3e-28 >seq21474 Length=6928 Score = 140 bits (154), Expect = 3e-28 Identities = 231/328 (70%), Gaps = 4/328 (1%) Strand=Plus/Minus Query 4374 AGCAATCGGTCAGCTACAAATTCTATATACTGGCT-CATGAGTTCGCAGTTAATTCCAAT 4432 || || || ||||| ||| |||| || || || || ||| ||| | ||||| || || || Sbjct 6044 AGTAAACGATCAGCGACATATTCAATGTA-TGACTTCATCAGTACACAGTTCATACCGAT 5986 Query 4433 TAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGAT 4492 | | || || || || | ||||||||||| ||||| || || || ||||| || | Sbjct 5985 GAGTGCGACCGGAAGTGCATCGGTCAAAAACTCCTGTTCAATGGTCACAGCTTCAGTAAC 5926 Query 4493 TATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGC 4552 ||| | |||| || | ||||||||| || | | | ||| | ||||||||| Sbjct 5925 AATACGAGTGATTTGTTCGACCGTTGGTTTATTAACGATATGTTTAAAGAGTAAACACGC 5866 Query 4553 AAAATCACAATGCAAACCTTCGTCTC-TGCTAATCAGTTCGTTAGAAAACGTTAATCCGG 4611 ||||||||||| | || || || | || || ||||||| ||| || || ||||| | Sbjct 5865 GAAATCACAATGAAGTCCCTCATCACGTGATA-TCAGTTCATTACTGAAGGTCAATCCCG 5807 Query 4612 GCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGC 4671 |||| | || | || || ||||||||||| | ||| ||||| || ||||||||| | Sbjct 5806 GCATAAGTCCACGTTTCTTTAGCCAAAATATTGAGGCGAATGAACCGCTAAAGAATATAC 5747 Query 4672 CTTCTACGGCGGCAAACGCTACTAATCG 4699 | || || | |||||||| ||||| || Sbjct 5746 CCTCAACTGATGCAAACGCAACTAAACG 5719 Score = 138 bits (152), Expect = 1e-27 Identities = 155/206 (75%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 4931 TACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATAT 4990 |||||| || || || || || |||||||| || || ||||||||||||||||| ||||| Sbjct 4580 TACTAAATTCTCATTAACGATTCCGTCACTCGCAGCGAAAAACGCCAAAACATGTGATAT 4521 Query 4991 AAAGTACTGTTC---GTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATC 5047 ||| | |||| |||| || ||| | | ||| | || || ||| | | ||||| Sbjct 4520 AAAATGACGTTCATTGTCA---TTGAGTCTGTGCCAATCGGTCATATCCCGACTCAAATC 4464 Query 5048 AACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCAGG 5107 |||||||| |||||||||||||| || || ||||| || ||||| ||||||||| | Sbjct 4463 CACTTCTTCGACAGTCCAAAACGATGCCTCTGCTTTCTTATACATCATCCAAATATCGTG 4404 Query 5108 ATACTGAATCGGAAGTATGACAAATC 5133 ||||| |||||| | || || |||| Sbjct 4403 ATACTCAATCGGGAACATTACGAATC 4378 Score = 123 bits (136), Expect = 2e-23 Identities = 92/108 (85%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 4808 TGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTAT 4867 |||||| |||||||| ||||| || | ||| ||||||||||| ||||||||||| || || Sbjct 5250 TGGGTCCTGAATATACGTGTCAATCAATAGACTATACATTTCCGAATGTATATTCTCAAT 5191 Query 4868 AGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 ||||| ||||| ||||||||||||| ||||| || ||||||||||| Sbjct 5190 TGCAATTTGAAACCCGTAAAAGCATCGCGCTTCAGTAACTTGAACTTC 5143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426318609724517