Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq8365 648 0.0 seq21474 129 8e-25 >seq8365 Length=5311 Score = 648 bits (718), Expect = 0.0 Identities = 1514/2252 (67%), Gaps = 45/2252 (2%) Strand=Plus/Plus Query 76803 GCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAA 76862 |||||||| ||||| | ||||||||| || || |||| |||| |||| |||| || Sbjct 639 GCGGGTTTCGTACGCAAATAGTACATCCCCGTCTTTAACCCCAATTTCCAGCCGTGAAAG 698 Query 76863 TGCATGCTTGTCAG-TTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACT 76921 ||||| ||| | |||| || | || | || |||||||| || | ||| || || Sbjct 699 TGCATCGATGTGATCTTTGCCATTG-TGGGTGCTGCGATATGAATGTTAAGCGATTGGCT 757 Query 76922 TTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTC 76981 ||| || |||||||| || | ||| || | ||||| |||| || || | ||||| Sbjct 758 TTGGTCAATGAAAGCCCCGCGATCGGCAGACATTTCAATAACTGTACGCTGTGATATTTC 817 Query 76982 CCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGGTT---TGTATT--TTGAATG 77036 ||| | |||||| | | || || | ||| | |||| || | || |||||| Sbjct 818 CCATACTGTTTTGTACAGTTCCTTCAAATCCTGGGGAA--TTCCCTCAATCAATTGAATC 875 Query 77037 GAACCACCATCTGATATAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTT 77096 || || || || || ||| |||||| | || ||||||||| | || | || || Sbjct 876 GATCCGTGATTAGAAATTATTTCATTCTTAAGATTATCATTCCAAAGTTCACGTTCAGTC 935 Query 77097 AAAACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTG 77156 ||| |||| | |||||| ||||||| |||||||||||||| ||||| ||||| || | Sbjct 936 AAATCTCTCAAAAGATGATGATTAACGATTTGAAATTCTCCGGACAAAACTCTTCGTGAA 995 Query 77157 TAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAA 77216 || |||||||| ||||| | ||| ||||| || || ||||||||||| || || || || Sbjct 996 TATATATTACTCGTATACGCTTCAACAGACTCGTTATTTCCCAAAATCTGTGCTGTCGAT 1055 Query 77217 GCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCT 77276 || || ||||| ||||| | ||| | ||| || ||||| || || || |||| || || Sbjct 1056 GCCGTCGGCATCGGTGCTAACAACAGACTGTTCCTGAGTCCGTGCATTTTGATCTTTTCC 1115 Query 77277 TTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGA 77336 || || | |||||| ||| || |||| ||| || ||| | || || || || Sbjct 1116 TTCAGTTCAGTCCAATTCCATAGGTCTGTCGGTGTCTTATTCCACATGTCATACTGCAGT 1175 Query 77337 ATTCCGTTACTAGCATATGATCCATTATATGTTTCATAAGGTCC-TTCTGTTTCAGCTAG 77395 || || ||| || || || | ||||| || ||||| || | ||| || || | Sbjct 1176 ATCCCTTTAGAGGCGGGAGAACCCTCATATGACTCGTAAGGACCATACTG-TTGTGCCAA 1234 Query 77396 TTCACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATC 77455 ||||||||||| ||| | || ||| |||| | ||| || || || | |||||||| Sbjct 1235 TTCACAACTCGATTCGAGAGCCCCGAAATATAATGTCTCAAATATTTGAATATTGAGACG 1294 Query 77456 TTGTGCTTCAATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTG 77515 || ||||| ||| |||||||| ||| | | ||||| || ||||| ||||||||||| Sbjct 1295 TTTCGCTTCGGGACTCTCAAACGGGTAACGCATGAGAATGAACGCATCGGCTAATCCCTG 1354 Query 77516 AACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATA 77575 ||||||||| ||||| || | | || |||||||| || | ||| |||| ||||| Sbjct 1355 AACTCCAATGCCAATCGGACGGTTCCTTTTATTGGAGCGTTCCGTTTCAGGAACGGGATA 1414 Query 77576 ATAATTAATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAG 77635 ||||||||| || ||||| ||||| | |||| || |||||| | || ||||| || Sbjct 1415 ATAATTAATATCGATAATCTTATTTAAGTTTCGGGTAATGACTTTAGCGACATCCTTGAG 1474 Query 77636 TTTAAGAAAATCAAATCTTCCATCTAT------AACAAACATGTTCAAAGCTATAGATGC 77689 || || ||||| | | | | || ||| || | || | || || Sbjct 1475 CTTTGCGAAGTCAAAGGTGCGGGTTTTGGTGTCGACGAACCGATTGAGTGCGACTGAAGC 1534 Query 77690 TAGATTACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATT 77749 | |||||| || || | || | | | ||||| | || || || |||||||| Sbjct 1535 CAAATTACACACGGCAATTTCGTCGGGAGATGAATATTCAACGATTTCAGTGCATAGATT 1594 Query 77750 ACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATA 77809 ||||| || || || ||||||||||| ||| |||| ||||| ||| ||||| Sbjct 1595 TGAGCATTTAATGGTTCCGAGATTTTGTTGATTGGACTTTCGGTTGCAATGGTCTTTATA 1654 Query 77810 AAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCA-GACGACTC 77868 || || |||| || || || || ||||| | |||| ||| | | ||| | |||| Sbjct 1655 AACCATGTACGGTGTGCCCGTCTCGATCTGAGCCTCGACAATGGCATACCACAATGACT- 1713 Query 77869 TAGCTTTTATCATAGATTTGTATCGCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAA 77928 ||| | | | ||||||| | | |||||||| |||| ||||| |||| Sbjct 1714 GAGCCCGAACCTGACGTTTGTATTTCTTTTCTCTTTCGTATTTCTCATATAAATCCTCAA 1773 Query 77929 ATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGT 77988 | | | ||||| |||| || || |||||||| | ||| |||||||||||||| Sbjct 1774 ACGCCTGACCCCACGTGTCATGTAAACCCGGGCATTCGTGTGGACACATCAATGACCATA 1833 Query 77989 CACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATA-AATAGA 78047 ||||| | ||| |||||||| || | ||| || ||||| || || ||| || | Sbjct 1834 TCCCATCGGATTCAACACGTTTCATGAACAAATCGGGAATCCAAAG-GCCATAGAACAAG 1892 Query 78048 TCTCGGGTTC-TATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAAT 78106 || || | | ||| ||| ||| || || ||||| |||| ||||| || || | | Sbjct 1893 TCACGTGCACGTAT-TTCCTCAGAACCCGTGTTCTTCCTAAGGTCGAGGAATTCGAATAC 1951 Query 78107 ATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTG 78166 ||| | |||||| ||||| | || | ||| | | | || || ||||| || || ||||| Sbjct 1952 ATCGGCATGCCACGGTTCGATGTAAACTGCGAAAGCGCCGGGACGTTTGTTCCCCCCCTG 2011 Query 78167 ATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGT 78226 ||| | |||| ||| || || || | || | |||||| || | | || || ||| | Sbjct 2012 ATCGACGTATCGGGCAGTATTGTTGAACACGCGCAACATCGGGACCAATCCATTTGATAT 2071 Query 78227 TCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTAT 78286 ||||| || || | ||||||| | || | || | || | || ||| || || Sbjct 2072 GCCATTCGTACCCGCAATATAAGTGCCCTTAGCCCTTATGCAATGAACATTTATTCCGAT 2131 Query 78287 TCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTAT 78346 || || || || ||||| | |||||| |||| | ||| ||||| || ||||| || Sbjct 2132 ACCACCGGCAGCTTTCGATATGACAGCGCATTGTTTGAGTGTGTCGTAAATCCCCTCAAT 2191 Query 78347 ACTGTCATCCATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTG 78405 ||||||||| |||| || || ||| ||||| || |||| ||| | || |||||| | Sbjct 2192 ACTGTCATCTTTCATGGTCAATAAG-AAACAACTGGACAATTGTGGGTGCGGAGTTCCGG 2250 Query 78406 CATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTT 78465 |||| || | |||||| |||||||| ||||||||| ||| || | ||||| || || | Sbjct 2251 CATTGAACAGTGTCGGTGATGCATGAGTAAACCATCGTTCGGACATGAGATTATACGTCT 2310 Query 78466 CAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATGCT 78525 |||| || | || ||||| | || || || || || |||||||| | ||| |||| Sbjct 2311 CAATGGCAGCGTCAATGTCATTTCCGTGTATCCCCACAGCGACACGCATGAGCATGTGCT 2370 Query 78526 GAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAA 78585 | |||| ||| | || |||| || || | || ||||| || | ||||| | Sbjct 2371 GCGGTCGTTCCGCGACTTTCCTATTGATCTTAATTAAATATGACCGCTCAAGTGTTTTGA 2430 Query 78586 AACCAAAATAGTTGT-ATGAAAAGTCTCTCTCGTAAATAATAACAGAATT---TAGTTTA 78641 |||| ||||| |||| |||| || || | || ||||| || | ||||| | ||| Sbjct 2431 AACCGAAATAATTGTAATGATAA-TCGCGATCATAAATGATGGCGGAATTGAGTCGTTCG 2489 Query 78642 TCTTTGTATTTGGTAACAATATCCATGACAGTAGTTGAAATAATAGGAGATCGTACACCA 78701 | || | || | ||| | || | | |||||| || || | | | |||| Sbjct 2490 GCATTCTTTTCAATGACATCGTAAATCTC---ATCTGAAATCATCGGTGTTTTGAGACCA 2546 Query 78702 TT-TTTAGGATTAACATAGTTAAATAAATCTTCCATTACATCACTAAATAGtttttttGT 78760 || | | || |||| | | | | ||| || ||||| ||| ||| ||||| Sbjct 2547 TTACTCTCGTTTCTCATA-TGATAGAGATCCCTAATGACATCGGAAAAGTTTTTCTTTGT 2605 Query 78761 TTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAATAGCATAATCAGGATGTTG 78820 ||| || |||| ||| || || || || | ||| || |||||||||||||| | ||||| Sbjct 2606 TTCTTTATGTAAATTTGACACTGCAATACGTGCCGCGAGAATAGCATAATCGGCATGTTT 2665 Query 78821 TGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATATCTAACTCTATAGTTGTGACCCC 78880 || || || || || ||||| ||||||||| |||| || || | || ||||| || Sbjct 2666 CGTTGTCATTGTTGCGGCGATTTCCGCCGCTAAATTATCCAATTCAACGGTCGTGACACC 2725 Query 78881 ATTATATAGTCCTTGAATAACTTTCATGGCGATTTTGAC--AGGATCTA-CAAACTCAGT 78937 ||||| || || || |||| | || ||||| | ||| | || ||| | Sbjct 2726 CGAATATATCCCGGCGATGACCTTCAATGTGA--TTGACGGTGCATCGATGTAATTCA-T 2782 Query 78938 GTTCAATCCATAACATAATTTTCTAATACGAGATGTGATTTTATCAAATATAAC--ATTC 78995 || ||| ||||| || | ||| || || ||||||||||| || || ||||| |||| Sbjct 2783 GTCCAAACCATAGCAGAGTTTCACGATTCGGGATGTGATTTTGTCGAACATAACTGATTC 2842 Query 78996 TCCTTGCATCCATTTCGTTTAATAACGAACAT 79027 | || | ||| | || |||||| || |||| Sbjct 2843 T--TTTCGTCCGTCTCTTTTAATTACATACAT 2872 >seq21474 Length=6928 Score = 129 bits (142), Expect = 8e-25 Identities = 216/310 (70%), Gaps = 2/310 (1%) Strand=Plus/Minus Query 47975 ATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGTTTAAC 48034 ||| || || |||| || ||| ||||||| | |||| ||||| || || ||| || Sbjct 6036 ATCAGCGACATATTCAATGTATGACTTCATCAGTACACAGTTCATACCGATGAGTGCGAC 5977 Query 48035 TGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTAT-CGATG 48093 || || || || || | |||||| ||||| || || ||||| || | || ||| | Sbjct 5976 CGGAAGTGCATCGGTCAAAAACTCCTGTTCAATGGTCACAGCTTCAGTAACAATACGA-G 5918 Query 48094 TTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGCAAAATCAC 48153 | | ||| | ||||| || | | ||||||||| | |||||| || ||||||| Sbjct 5917 TGATTTGTTCGACCGTTGGTTTATTAACGATATGTTTAAAGAGTAAACACGCGAAATCAC 5858 Query 48154 AATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTC 48213 ||||||| || ||||| | || | ||| ||| || || | || ||||| |||| Sbjct 5857 AATGAAGTCCCTCATCACGTGATATCAGTTCATTACTGAAGGTCAATCCCGGCATAAGTC 5798 Query 48214 CACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGG 48273 ||||||| || ||||||||||||| ||||| || || ||||||||| || || || | Sbjct 5797 CACGTTTCTTTAGCCAAAATATTGAGGCGAATGAACCGCTAAAGAATATACCCTCAACTG 5738 Query 48274 CCGCAAATGC 48283 ||||| || Sbjct 5737 ATGCAAACGC 5728 Score = 111 bits (122), Expect = 2e-19 Identities = 144/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 48525 AAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAA 48584 ||||||||||| || ||||| ||||| ||||| ||||| || || |||||| |||||| Sbjct 4576 AAATTCTCATTAACGATTCCGTCACTCGCAGCGAAAAACGCCAAAACATGTGATATAAAA 4517 Query 48585 TATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCT 48644 | ||| ||| | | ||| | | ||| || | ||||| | ||| |||||| Sbjct 4516 TGACGTTCATTGTCATTGAGTCTGTGCCAATCGGTCATATCCCGACTCAAATCCACTTCT 4457 Query 48645 TCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACTGTATTGG 48704 || | |||||||| |||||||||||||| |||||||| |||| ||||| || | Sbjct 4456 TCGACAGTCCAAAACGATGCCTCTGCTTTCTTATACATCATCCAAATATCGTGATACTCA 4397 Query 48705 ATTGGGAAAATAACAAATC 48723 || ||||| || || |||| Sbjct 4396 ATCGGGAACATTACGAATC 4378 Score = 95.1 bits (104), Expect = 2e-14 Identities = 113/153 (74%), Gaps = 3/153 (2%) Strand=Plus/Minus Query 47793 CTTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATT 47849 ||| ||||||| |||| ||| ||| | || ||||||| | ||||| || || | Sbjct 6527 CTTCAAAAGTCCGCATCCAAAACAAATTTATGCTCTTCTTTATTGGACATTACACCACTC 6468 Query 47850 TTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 47909 ||||||||||| || || | ||||| || ||||| ||||| || |||||||| || | | Sbjct 6467 TTTTGATATTCGCCGACTCTCTTCTCAAAGAAATTCGTTTTCCCCTCCAATGAAATCTGT 6408 Query 47910 TCCATAAAATCAAATGGATTAACTGCATTATAA 47942 ||||| ||||| || ||||| | ||||||| Sbjct 6407 TCCATGAAATCGAAAGGATTCGACGAATTATAA 6375 Score = 87.8 bits (96), Expect = 2e-12 Identities = 90/115 (78%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 48411 TAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAAT 48470 || || || || || |||||||||||||| || || ||||| |||||||| || ||||| Sbjct 5237 TACGTGTCAATCAATAGACTATACATTTCCGAATGTATATTCTCAATTGCAATTTGAAAC 5178 Query 48471 CCGTAAAAACATCTCGCTTCTGTGATCTGTACCTC-CGTACAAAATCGTTCAGCC 48524 |||||||| |||| |||||| || | || || || || || |||||||| ||| Sbjct 5177 CCGTAAAAGCATCGCGCTTCAGTAACTTGAACTTCACGAAC-GAATCGTTCCGCC 5124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693449230771360