Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq8365 659 0.0 seq21474 143 4e-29 >seq8365 Length=5311 Score = 659 bits (730), Expect = 0.0 Identities = 1530/2281 (67%), Gaps = 43/2281 (2%) Strand=Plus/Plus Query 75368 TTATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATACCA 75427 ||||| | ||||| ||||| | | | || ||||| ||||| | ||||||||| || Sbjct 609 TTATCGACAGTGAATTGAATAGCATTTGCCGCGGGTTTCGTACGCAAATAGTACATCCCC 668 Query 75428 GTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAG-TTTGGAATAACTCGG 75486 || |||| |||| |||| |||| || ||||| ||| | |||| || | || Sbjct 669 GTCTTTAACCCCAATTTCCAGCCGTGAAAGTGCATCGATGTGATCTTTGCCATTG-TGGG 727 Query 75487 ATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGC 75546 | || |||||||| || | ||| || ||||| || |||||||| || | ||| || | Sbjct 728 TGCTGCGATATGAATGTTAAGCGATTGGCTTTGGTCAATGAAAGCCCCGCGATCGGCAGA 787 Query 75547 CATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATC 75606 ||||| |||| || || | |||||||| | |||||| | | || || | ||| Sbjct 788 CATTTCAATAACTGTACGCTGTGATATTTCCCATACTGTTTTGTACAGTTCCTTCAAATC 847 Query 75607 ATCTGGAAGATT---TGTATT--TTGAATGGATCCGCCATCAGATATAATTGTATTCTTG 75661 | |||| || | || |||||| |||||| || ||| || ||| |||||| Sbjct 848 CTGGGGAA--TTCCCTCAATCAATTGAATCGATCCGTGATTAGAAATTATTTCATTCTTA 905 Query 75662 ATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAATT 75721 | | ||||||||| | || | || || ||| |||| | |||||| ||||||| ||| Sbjct 906 AGATTATCATTCCAAAGTTCACGTTCAGTCAAATCTCTCAAAAGATGATGATTAACGATT 965 Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 ||||||||||| ||||| |||||||| | || |||||||| ||||| | ||| ||||| Sbjct 966 TGAAATTCTCCGGACAAAACTCTTCGTGAATATATATTACTCGTATACGCTTCAACAGAC 1025 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 || || ||||||||||| || || || || || |||||||| ||||| | ||| | ||| Sbjct 1026 TCGTTATTTCCCAAAATCTGTGCTGTCGATGCCGTCGGCATCGGTGCTAACAACAGACTG 1085 Query 75842 TTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAT 75901 || ||||| || || || |||| || || || || | |||||| ||| || |||| Sbjct 1086 TTCCTGAGTCCGTGCATTTTGATCTTTTCCTTCAGTTCAGTCCAATTCCATAGGTCTGTC 1145 Query 75902 GGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCATTATAT 75961 ||| || ||| | || || || || || || || || || || | |||| Sbjct 1146 GGTGTCTTATTCCACATGTCATACTGCAGTATCCCTTTAGAGGCGGGAGAACCCTCATAT 1205 Query 75962 GTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTAATAA 76021 | ||||||| || | || || || | ||| ||||||| || | || ||| |||| Sbjct 1206 GACTCGTAAGGACCATACTGTTGTGCCAATTCACAACTCGATTCGAGAGCCCCGAAATAT 1265 Query 76022 ATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATAATGT 76081 | ||| || || || | |||| ||| || |||||| |||| ||||| || ||| | Sbjct 1266 AATGTCTCAAATATTTGAATATTGAGACGTTTCGCTTCGGGACTCTCAAACGGGTAACGC 1325 Query 76082 AAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTA 76141 | ||||| || ||||| |||| ||||||||||||||| ||||| || | | || ||| Sbjct 1326 ATGAGAATGAACGCATCGGCTAATCCCTGAACTCCAATGCCAATCGGACGGTTCCTTTTA 1385 Query 76142 TTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATTT 76201 ||||| ||| | ||| |||| || |||||||||||||| ||||| ||||| | ||| Sbjct 1386 TTGGAGCGTTCCGTTTCAGGAACGGGATAATAATTAATATCGATAATCTTATTTAAGTTT 1445 Query 76202 CTGACAACTACTTTAACCACGTCCTTTAG-TTTGAGAAAATCAAA--------TTTTCCA 76252 | | || |||||| | || ||||| || |||| | || ||||| |||| Sbjct 1446 CGGGTAATGACTTTAGCGACATCCTTGAGCTTTGCG-AAGTCAAAGGTGCGGGTTTT--- 1501 Query 76253 TCTATC-ACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGC 76311 | || || ||| ||| || || | || || | |||||| ||||| | || | | Sbjct 1502 GGTGTCGACGAACCGATTGAGTGCGACTGAAGCCAAATTACACACGGCAATTTCGTCGGG 1561 Query 76312 ATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTG 76371 | | ||||| | || || ||||||||||| || || || ||||| |||||||| Sbjct 1562 AGATGAATATTCAACGATTTCAGTGCATAGATTTGAGCATTTAATGGTTCCGAGATTTTG 1621 Query 76372 TTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAAT 76431 ||| ||| |||| ||| || ||| ||||||| | |||| || || || || || Sbjct 1622 TTGATTGGACTTTCGGTTGCAATGGTCTTTATAAACCATGTACGGTGTGCCCGTCTCGAT 1681 Query 76432 CTGTGATTCGATAATAGATTTCCA-GACGACTCTAGCTTTTATTATAGATTTGTATCGCT 76490 ||| | |||| ||| | | ||| | |||| ||| | | ||||||| || Sbjct 1682 CTGAGCCTCGACAATGGCATACCACAATGACT-GAGCCCGAACCTGACGTTTGTATTTCT 1740 Query 76491 TCTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAAC 76550 | |||||||| |||| |||||| ||||| | | ||||| |||| |||| Sbjct 1741 TTTCTCTTTCGTATTTCTCATATAAATCCTCAAACGCCTGACCCCACGTGTCATGTAAAC 1800 Query 76551 CAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAA 76610 | || ||||| | ||||||||||||||||| ||||| | ||| |||||||| | Sbjct 1801 CCGGGCATTCGTGTGGACACATCAATGACCATATCCCATCGGATTCAACACGTTTCATGA 1860 Query 76611 AGAGATCAGGTATCCATAGAGCAATA-AATAGATCTCGGGTTCTACGTTCTTCATTTCCT 76669 | | ||| || ||||| || || ||| || | || || | | ||| ||| || Sbjct 1861 ACAAATCGGGAATCCAAAG-GCCATAGAACAAGTCACGTGCACGTATTTCCTCAGAACCC 1919 Query 76670 GTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATC 76729 || ||||| |||| || ||||| || | | ||| | |||||| ||||| | || | Sbjct 1920 GTGTTCTTCCTAAGGTCGAGGAATTCGAATACATCGGCATGCCACGGTTCGATGTAAACT 1979 Query 76730 GCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAA 76789 || | | | || || ||||| || || |||||||| | |||| |||||| || || | Sbjct 1980 GCGAAAGCGCCGGGACGTTTGTTCCCCCCCTGATCGACGTATCGGGCAGTATTGTTGAAC 2039 Query 76790 ACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCA 76849 || | |||||| || | | || || ||| | ||||| || || | ||||||| | || Sbjct 2040 ACGCGCAACATCGGGACCAATCCATTTGATATGCCATTCGTACCCGCAATATAAGTGCCC 2099 Query 76850 CATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCA 76909 || | || | || | || || || || || || ||| || || | ||| Sbjct 2100 TTAGCCCTTATGCAATGAACATTTATTCCGATACCACCGGCAGCTTTCGATATGACAGCG 2159 Query 76910 CAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCAT-GTTAAGAAGAAA 76968 || |||| | |||||| || || ||||| ||||| ||||| |||| || || ||| || Sbjct 2160 CATTGTTTGAGTGTGTCGTAAATCCCCTCAATACTGTCATCTTTCATGGTCAATAAG-AA 2218 Query 76969 ACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGT 77028 ||| || |||| ||| | || |||||| ||||| |||| ||| || ||||||||||| Sbjct 2219 ACAACTGGACAATTGTGGGTGCGGAGTTCCGGCATTGAACAGTGTCGGTGATGCATGAGT 2278 Query 77029 GAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATG 77088 |||||| ||| || | ||||| || || ||||| | || || || || | || Sbjct 2279 AAACCATCGTTCGGACATGAGATTATACGTCTCAATGGCAGCGTCAATGTCATTTCCGTG 2338 Query 77089 AATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTAT 77148 || || |||||||||||||| | ||| ||||| |||||||| | || |||| || Sbjct 2339 TATCCCCACAGCGACACGCATGAGCATGTGCTGCGGTCGTTCCGCGACTTTCCTATTGAT 2398 Query 77149 TTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGT-ATGAAAAGTCTC 77207 || | || ||||| || | ||||| ||||| ||||| |||| |||| || || | Sbjct 2399 CTTAATTAAATATGACCGCTCAAGTGTTTTGAAACCGAAATAATTGTAATGATAA-TCGC 2457 Query 77208 TTTCGTAAATAATAACCGAATT---TAGTTTGTCCTTATATTTGGTAACAATATCCATGA 77264 || ||||| || | ||||| | ||| | | || | || | ||| | || Sbjct 2458 GATCATAAATGATGGCGGAATTGAGTCGTTCGGCATTCTTTTCAATGACATCGTAAATCT 2517 Query 77265 CAGTGGTAGAAATAATTGGAGATCGTATTCCATT-TTTAGGATTAACATAGTTAAATAAG 77323 || ||||| || || | | | ||||| | | || |||| | | | | Sbjct 2518 CA---TCTGAAATCATCGGTGTTTTGAGACCATTACTCTCGTTTCTCATA-TGATAGAGA 2573 Query 77324 TCTTCCATTACGTCGCTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATT 77383 || || || ||| ||| ||| |||||||| || |||| ||| || || || || Sbjct 2574 TCCCTAATGACATCGGAAAAGTTTTTCTTTGTTTCTTTATGTAAATTTGACACTGCAATA 2633 Query 77384 CTAGCAGCTAGAATTGCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCC 77443 | || || ||||| ||||| || | ||||| || || || || || ||||| ||| Sbjct 2634 CGTGCCGCGAGAATAGCATAATCGGCATGTTTCGTTGTCATTGTTGCGGCGATTTCCGCC 2693 Query 77444 GCTAAAGTATCTAATTCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATG 77503 |||||| |||| ||||| | || || || || ||||| ||| || || |||| Sbjct 2694 GCTAAATTATCCAATTCAACGGTCGTGACACCCGAATATATCCCGGCGATGACCTTCAAT 2753 Query 77504 GCTATTTTGATAGGATCTACAAACTCGGTGTTCAAACCATAACATAATTTTCTAATACGA 77563 | ||| | ||| | | | ||| ||||||||| || | ||| || || Sbjct 2754 GTGATTGACGGTGCATCGATGTAATTCATGTCCAAACCATAGCAGAGTTTCACGATTCGG 2813 Query 77564 GATGTGATTTTATCAAACATGAC--ATTCTCCTTACATCCATTTCGTTTAATGACGAACA 77621 ||||||||||| || ||||| || ||||| || | ||| | || |||||| || ||| Sbjct 2814 GATGTGATTTTGTCGAACATAACTGATTCT--TTTCGTCCGTCTCTTTTAATTACATACA 2871 Query 77622 T 77622 | Sbjct 2872 T 2872 >seq21474 Length=6928 Score = 143 bits (158), Expect = 4e-29 Identities = 212/298 (71%), Gaps = 2/298 (1%) Strand=Plus/Minus Query 46464 ATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGTTTGAC 46523 ||| || || |||| || || | ||||||| | |||| ||||| || |||||| ||| Sbjct 6036 ATCAGCGACATATTCAATGTATGACTTCATCAGTACACAGTTCATACCGATGAGTGCGAC 5977 Query 46524 CGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTAT-CGATG 46582 ||| || || || || | |||||| |||||||| || ||||| || | | || ||| | Sbjct 5976 CGGAAGTGCATCGGTCAAAAACTCCTGTTCAATGGTCACAGCTTCAGTAACAATACGA-G 5918 Query 46583 TTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCAAAATCAC 46642 | | | ||| | ||||| || | | ||||||||| | |||||| || ||||||| Sbjct 5917 TGATTTGTTCGACCGTTGGTTTATTAACGATATGTTTAAAGAGTAAACACGCGAAATCAC 5858 Query 46643 AATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTC 46702 ||||||| || ||||| | || | ||| ||| || || | || ||||| |||| Sbjct 5857 AATGAAGTCCCTCATCACGTGATATCAGTTCATTACTGAAGGTCAATCCCGGCATAAGTC 5798 Query 46703 CACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTAC 46760 |||| || || ||||||||||| | ||||| || || ||||||||| || || || Sbjct 5797 CACGTTTCTTTAGCCAAAATATTGAGGCGAATGAACCGCTAAAGAATATACCCTCAAC 5740 Score = 116 bits (128), Expect = 5e-21 Identities = 145/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 47014 AAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAA 47073 ||||||||||| || ||||| ||||| ||||| ||||| ||||| |||||| |||||| Sbjct 4576 AAATTCTCATTAACGATTCCGTCACTCGCAGCGAAAAACGCCAAAACATGTGATATAAAA 4517 Query 47074 TATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCT 47133 | ||||| | | | ||| | | ||| || | ||||| | ||| |||||| Sbjct 4516 TGACGTTCATTGTCATTGAGTCTGTGCCAATCGGTCATATCCCGACTCAAATCCACTTCT 4457 Query 47134 TCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACGATATTGG 47193 || | ||||| || || ||||||||||| |||||||| |||| ||||| |||| | Sbjct 4456 TCGACAGTCCAAAACGATGCCTCTGCTTTCTTATACATCATCCAAATATCGTGATACTCA 4397 Query 47194 ATCGGAAAAATAACAAATC 47212 ||||| || || || |||| Sbjct 4396 ATCGGGAACATTACGAATC 4378 Score = 84.2 bits (92), Expect = 3e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 46896 AACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTG 46955 || ||| || || || || |||||||||||||| ||||| || || ||||| || || || Sbjct 5241 AATATACGTGTCAATCAATAGACTATACATTTCCGAATGTATATTCTCAATTGCAATTTG 5182 Query 46956 AAATCCGTAAAAACATCTTGCTTCAGTAA 46984 ||| |||||||| |||| |||||||||| Sbjct 5181 AAACCCGTAAAAGCATCGCGCTTCAGTAA 5153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 711682763455680