Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq32426 113 1e-19 seq21107 113 1e-19 >seq32426 Length=2656 Score = 113 bits (124), Expect = 1e-19 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 151895 GACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954 ||| || |||||||| || || ||||| || ||||| || | | ||| | || || || Sbjct 224 GACGAGGTGAAGAGTCGATTCCTTTTGAATATTGTAGTCCGAGAGAGTACGGCCGTCCTC 283 Query 151955 TAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 | ||| ||||| ||||| || | ||| || |||| | || || || || ||||| Sbjct 284 CAATTGTTTTCCGGCAAAGATCAGACGCTGTTGATCCGGAGGAATCCCCTCTTTATCTTG 343 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 |||||| ||||||| |||| | | ||||||| || ||||| | ||| |||||||| Sbjct 344 AATTTTGGCTTTGACATTCTCAATGGTGTCTGAGGGTTCCACTTCCAAAGTGATAGTTTT 403 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| |||| || |||||||| | ||||| Sbjct 404 GCCGATGAGTGTTTTCACGAATATTTGCAT 433 >seq21107 Length=15695 Score = 113 bits (124), Expect = 1e-19 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | | || | ||| ||||| |||||||| || || ||||||||| | ||| Sbjct 14164 CCTGAGACGCAATACTAAATGGAGAGTCGACTCTTTCTGAATATTGTAATCGCTGAGAGT 14105 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | || || || | ||| || ||||| ||||| ||||| || |||| | ||||| Sbjct 14104 CCGTCCGTCCTCCAATTGTTTTCCCGCGAAAATAAGTCTCTGTTGATCCGGGGGAATTCC 14045 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 || || || ||||| || || ||| |||| | | | || || || ||||| | Sbjct 14044 CTCTTTATCCTGAATCTTGGCCTTAACATTCTCAATGGTATCGGAGGGTTCCACTTCCAA 13985 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| || |||||||| ||||||||||| ||||||| |||||| Sbjct 13984 AGTGATGGTTTTGCCGGTGAGAGTCTTAACGAAGATCTGCAT 13943 Score = 105 bits (116), Expect = 2e-17 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961 || ||||| ||||| ||||| || || ||||||| | || | |||||||| || | Sbjct 13917 TGGAGAGTCGACTCCTTTTGAATATTATAATCGGACAGTGTACGTCCATCTTCGAGTTGT 13858 Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || |||||||| || | | |||||| || | | || || || || ||||||||||| Sbjct 13857 TTTCCGGCGAAAATCAATCGCTGCTGATCGGGGGGAATACCCTCTTTATCTTGAATTTTG 13798 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 || ||| |||| | | | || ||| ||||| | ||||| |||||||| ||| Sbjct 13797 GCCTTAACATTCTCAATGGTATCGCTCGGCTCAACTTCCAATGTAATGGTTTTGCCGGTG 13738 Query 152082 AGAGTCTTCACGAAGACCTGCAT 152104 |||||||| ||||||| ||||| Sbjct 13737 AGAGTCTTGACGAAGATTTGCAT 13715 Score = 95.1 bits (104), Expect = 3e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 151895 GACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954 ||| || |||||||| || || ||||| || || || || | | ||| | || || || Sbjct 14997 GACGAGGTGAAGAGTCGATTCCTTTTGAATATTATAGTCCGAGAGAGTACGGCCGTCCTC 14938 Query 151955 TAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 || ||| ||||| ||||| || | |||||| |||| | || || || || ||||| Sbjct 14937 TAATTGTTTTCCGGCAAAGATCAGACGCTGCTGATCCGGAGGAATCCCCTCTTTATCTTG 14878 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 |||||| ||| || | || | | | || || || || || | || || ||||| Sbjct 14877 AATTTTCGCTTTCACGTTTTCGATGGTATCAGAGGGTTCCACCTCCAATGTGATGGTTTT 14818 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||||||||| ||||||| |||||| Sbjct 14817 ACCGGTGAGAGTCTTGACGAAGATCTGCAT 14788 Score = 89.7 bits (98), Expect = 1e-12 Identities = 144/206 (70%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961 || ||||| ||||| |||||||| || ||||||| | || | |||||||| || | Sbjct 14762 TGGAGAGTCGACTCCTTTTGGATATTATAATCGGACAGTGTACGTCCATCTTCGAGTTGT 14703 Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 ||||||||||| || | | |||||| || | | || || || || ||||||||||| Sbjct 14702 TTCCCGGCGAAAATCAATCGCTGCTGATCGGGGGGAATACCCTCTTTGTCTTGAATTTTG 14643 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTC---TCTACTTCAAGAGTAATAGTTTTGCCC 152078 || ||| | || | | | || ||| || ||||| | ||||| ||||| || Sbjct 14642 GCCTTTACATTTTCGATGGTATC---GCTCGGTTCAACTTCCAATGTAATGGTTTTACCG 14586 Query 152079 GTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || || |||| ||||| Sbjct 14585 GTGAGTGTTTTGACAAAGATTTGCAT 14560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151744496225279