Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq21107 143 6e-29 seq32426 134 3e-26 seq68991 116 8e-21 seq14450 114 3e-20 seq66076 111 3e-19 seq54310 86.0 1e-11 >seq21107 Length=15695 Score = 143 bits (158), Expect = 6e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 282871 AACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG 282930 |||| || ||||| || | || || || | || ||| ||||| || || ||||| | Sbjct 15016 AACCTCCGCGCAGACGCAAGACGAGGTGAAGAGTCGATTCCTTTTGAATATTATAGTCCG 14957 Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 || || ||||| ||||||| |||||| ||||||||||||| ||| || || || | Sbjct 14956 AGAGAGTACGGCCGTCCTCTAATTGTTTTCCGGCAAAGATCAGACGCTGCTGATCCGGAG 14897 Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 |||| ||||| || ||||| || || ||||| ||| | ||||| || || || | ||| | Sbjct 14896 GAATCCCCTCTTTATCTTGAATTTTCGCTTTCACGTTTTCGATGGTATCAGAGGGTTCCA 14837 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | || | ||||| || ||||| || | |||||| ||||| |||||||| Sbjct 14836 CCTCCAATGTGATGGTTTTACCGGTGAGAGTCTTGACGAAGATCTGCAT 14788 Score = 105 bits (116), Expect = 1e-17 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || |||||||| || || || | || || || ||||| || |||||||||||||| || Sbjct 14750 TCCTTTTGGATATTATAATCGGACAGTGTACGTCCATCTTCGAGTTGTTTCCCGGCGAAA 14691 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 ||||| || || || || ||||||||||| |||||||| || || || ||||| | Sbjct 14690 ATCAATCGCTGCTGATCGGGGGGAATACCCTCTTTGTCTTGAATTTTGGCCTTTACATTT 14631 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||| || || | ||| ||||| | || || || ||||| || | || || || Sbjct 14630 TCGATGGTATCGCTCGGTTCAACTTCCAATGTAATGGTTTTACCGGTGAGTGTTTTGACA 14571 Query 283089 AATATCTGCAT 283099 || || ||||| Sbjct 14570 AAGATTTGCAT 14560 Score = 96.9 bits (106), Expect = 7e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 ||||| || || ||||| || || || || || ||||| | |||||| || || || Sbjct 14133 TCTTTCTGAATATTGTAATCGCTGAGAGTCCGTCCGTCCTCCAATTGTTTTCCCGCGAAA 14074 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | | ||||| || ||||| ||||| || || || ||||| || || || | Sbjct 14073 ATAAGTCTCTGTTGATCCGGGGGAATTCCCTCTTTATCCTGAATCTTGGCCTTAACATTC 14014 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || || || || || | ||| ||||| | |||||| || || || || | |||||||||| Sbjct 14013 TCAATGGTATCGGAGGGTTCCACTTCCAAAGTGATGGTTTTGCCGGTGAGAGTCTTAACG 13954 Query 283089 AATATCTGCAT 283099 || |||||||| Sbjct 13953 AAGATCTGCAT 13943 Score = 87.8 bits (96), Expect = 4e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || ||||| || || || || | || || || ||||| || |||||||| ||||| || Sbjct 13905 TCCTTTTGAATATTATAATCGGACAGTGTACGTCCATCTTCGAGTTGTTTTCCGGCGAAA 13846 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 ||||| || || || || ||||||||||| || ||||| || || || || || | Sbjct 13845 ATCAATCGCTGCTGATCGGGGGGAATACCCTCTTTATCTTGAATTTTGGCCTTAACATTC 13786 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || || || || | || ||||| | || || || || || || | |||||| ||| Sbjct 13785 TCAATGGTATCGCTCGGCTCAACTTCCAATGTAATGGTTTTGCCGGTGAGAGTCTTGACG 13726 Query 283089 AATATCTGCAT 283099 || || ||||| Sbjct 13725 AAGATTTGCAT 13715 >seq32426 Length=2656 Score = 134 bits (148), Expect = 3e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 282871 AACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG 282930 |||| || ||||| || | || || || | || ||| ||||| || |||||||| | Sbjct 205 AACCTCCGCGCAGACGCAAGACGAGGTGAAGAGTCGATTCCTTTTGAATATTGTAGTCCG 264 Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 || || ||||| ||||| | |||||| ||||||||||||| ||| ||||| || | Sbjct 265 AGAGAGTACGGCCGTCCTCCAATTGTTTTCCGGCAAAGATCAGACGCTGTTGATCCGGAG 324 Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 |||| ||||| || ||||| || || ||||| || | || || ||||| || | ||| | Sbjct 325 GAATCCCCTCTTTATCTTGAATTTTGGCTTTGACATTCTCAATGGTGTCTGAGGGTTCCA 384 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||| | |||||| || || || | | || || |||||||| ||||| Sbjct 385 CTTCCAAAGTGATAGTTTTGCCGATGAGTGTTTTCACGAATATTTGCAT 433 >seq68991 Length=328 Score = 116 bits (128), Expect = 8e-21 Identities = 126/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || ||||| || | |||||| ||||||||||||| ||| ||||| || ||| Sbjct 5 AGTGTACGTCCATCTTCCAATTGTTTTCCGGCAAAGATCAGACGCTGTTGATCCGGGGGA 64 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || || ||||| || || || ||||| || | |||||||| || || | ||||||| Sbjct 65 ATCCCTTCTTTGTCCTGTATTTTCGCTTTGACATTTTCGATAGTATCGGAGGGTTCGACT 124 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | || || || ||||| || | ||| || |||||||| ||||| Sbjct 125 TCCAATGTAATGGTTTTACCGGTGAGAGTTTTCACGAATATTTGCAT 171 Score = 93.3 bits (102), Expect = 9e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || ||||| ||||| || ||| || || || ||||| || | |||||||||||||||| Sbjct 209 TCCTTTTGAATGTTATAATCACTGAGTGTACGTCCATCTTCCAATTGTTTCCCGGCAAAG 268 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTAC 283024 |||| ||| ||||| || ||||||||||| || ||||| || || ||||| || Sbjct 269 ATCAGACGCTGTTGATCCGGGGGAATACCCTCTTTATCTTGAATTTTAGCTTTGAC 324 >seq14450 Length=5806 Score = 114 bits (126), Expect = 3e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 282910 CTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGA 282969 ||||||| || || || ||| || || || || || || | ||||||||| || || | Sbjct 5279 CTTTTTGTATATTATAATCACTCAGAGTCCGTCCGTCTTCCAATTGTTTCCCCGCGAAAA 5338 Query 282970 TCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTAT 283029 | | | ||||| || ||||| ||||| || || || ||||| || || || | | Sbjct 5339 TGAGTCTCTGTTGATCCGGGGGAATTCCCTCTTTATCCTGTATCTTCGCCTTAACATTCT 5398 Query 283030 CGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGA 283089 | || || || || | ||| ||||| | |||||| ||||| ||||| || |||||||||| Sbjct 5399 CAATGGTATCAGACGGTTCCACTTCCAAAGTGATGGTCTTTCCCGTTAATGTCTTAACGA 5458 Query 283090 ATATCTGCATTTTCATAT 283107 | || ||||||||| ||| Sbjct 5459 AAATTTGCATTTTCGTAT 5476 >seq66076 Length=3687 Score = 111 bits (122), Expect = 3e-19 Identities = 246/364 (68%), Gaps = 10/364 (3%) Strand=Plus/Plus Query 273588 ATATCTTTAGGGTTGTAACTCGGAACGTTCGTAGACCAACCGGTGCCAATACCGGAAGAA 273647 |||||| | ||||| ||| | |||| || ||| ||| || ||||| || || || Sbjct 629 ATATCTCTGGGGTTATAATTAGGAATTTTGGTACTCCATCCCGTGCCTATCCCTTCAGCC 688 Query 273648 CCATTCACCAGAATACTCGGGATAATTGGGACATAATATTCGGGCTCAATTTTATCACCA 273707 |||||||| || | |||| ||||| || |||||||||||||| |||||||| | | Sbjct 689 CCATTCACAAGTACCATCGGAATAATCGGCACATAATATTCGGGTTCAATTTTTAAATTA 748 Query 273708 TCGTCGTAAAGGTACTTCAACAAAGCATCATCCGTATCAACG--AAAACCTTTCGCGTCT 273765 || || |||||| | ||||| | | |||||||| || || || | |||| || | Sbjct 749 TCATCATAAAGGAAATTCAATAGCGGATCATCCG--CCACCGGAAAGATTTTTCTCGCCA 806 Query 273766 GAGGATTCAGTTTCGTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCC 273825 ||| | || | || || || || | || |||||| || || || || || || | Sbjct 807 AAGGGCTGAGCATTGTAAATATATAACGGGGACTCGCGGCATCTTTACCCCCCTGAAGAC 866 Query 273826 TCGAACCAAACTGACC-CTCGG--GCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAAT 273882 | ||| |||||||| |||| | | ||| || | ||| || || |||||||||| Sbjct 867 GTGTACCGAACTGACCGATCGGTTGTAATAG---ATTAACGTTATTACTCCCGACGTAAT 923 Query 273883 CCTGAGCCATATTCACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGT 273942 ||| |||| | | || ||| | | ||||| || ||||| ||||| ||| | Sbjct 924 TCTGTGCCAAACCGATAATGGTCGACATTAATGATACTTCTCCGTGATGATACGCGGAAT 983 Query 273943 GTTC 273946 |||| Sbjct 984 GTTC 987 >seq54310 Length=4878 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 3163 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 3107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1044855589865646