Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq21474 125 7e-24 seq21782 82.4 8e-11 >seq21474 Length=6928 Score = 125 bits (138), Expect = 7e-24 Identities = 234/339 (69%), Gaps = 10/339 (3%) Strand=Plus/Minus Query 23343 ATCTGCTACAAATTCAATATATTGACA-CATCAAATCATAGTTTATACCTATTAGTTTTA 23401 ||| || ||| ||||||| ||| ||| ||||| || |||| ||||| || ||| | Sbjct 6036 ATCAGCGACATATTCAATGTAT-GACTTCATCAGTACACAGTTCATACCGATGAGTGCGA 5978 Query 23402 CTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGCATCTTTAATTATTTGAA 23461 | |||| ||||| || || | |||||||| ||||| || ||| || || Sbjct 5977 CCGGAAGTGCATCGGTCAAAAACTCCTGTTCAATGGTCACAGCTTCAGTAACAATACGAG 5918 Query 23462 CAATAACTTCTTCACTAGGTGGATATTTTAA----ATACTTAAACAATAAACATGCAAAA 23517 || || ||| | ||| | | |||| || ||||| | |||||| || ||| Sbjct 5917 TGAT---TTGTTCGACCGTTGGTT-TATTAACGATATGTTTAAAGAGTAAACACGCGAAA 5862 Query 23518 TCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATT 23577 |||||||| || || ||||| | |||| ||||||| || || ||||| ||||| Sbjct 5861 TCACAATGAAGTCCCTCATCACGTGATATCAGTTCATTACTGAAGGTCAATCCCGGCATA 5802 Query 23578 AATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCA 23637 | ||| ||||| || | ||||||||||| || ||||| ||| |||||| ||||||||| Sbjct 5801 AGTCCACGTTTCTTTAGCCAAAATATTGAGGCGAATGAACCGCTAAAGAATATACCCTCA 5742 Query 23638 ACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCA 23676 || | ||||| || || | |||| ||||||| ||| Sbjct 5741 ACTGATGCAAACGCAACTAAACGTTCGGCAAATGTGGCA 5703 Score = 98.7 bits (108), Expect = 1e-15 Identities = 89/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 23779 ATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGA 23838 ||||| || ||||| | || |||||||||||| ||||| ||||| ||||| ||||| ||| Sbjct 5240 ATATACGTGTCAATCAATAGACTATACATTTCCGAATGTATATTCTCAATTGCAATTTGA 5181 Query 23839 AACCCATAAAAACATCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTT 23890 ||||| ||||| |||| ||||||| | |||||| ||| || |||| || Sbjct 5180 AACCCGTAAAAGCATCGCGCTTCAGTAACTTGAACTTCACGAACGAATCGTT 5129 >seq21782 Length=3065 Score = 82.4 bits (90), Expect = 8e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 139436 TACATACAAAATTTTGGATTGTTGATAATAAACATATATATATTGGAAGTGCTAACATGG 139495 |||||||||||||| ||| | ||| ||||||| | ||| | || ||||| ||||||| Sbjct 1903 TACATACAAAATTTATAATTATCGATTCTAAACATTTGTATGTCGGGAGTGCGAACATGG 1844 Query 139496 ACTGGCGATCACTAACTCAAGTAAAAGAATTAGGTATCACAATTTATAAT 139545 | ||| ||||||| || || || |||||| | || || | |||| |||| Sbjct 1843 ATTGGAGATCACTGACACATGTGAAAGAACTCGGAATGTCCATTTTTAAT 1794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 520572469148600