Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq21107 113 3e-20 seq32426 107 1e-18 seq68991 91.5 1e-13 seq17817 86.0 5e-12 >seq21107 Length=15695 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | ||| || |||||||| || |||||||| || || || || | | Sbjct 15014 CCTCCGCGCAGACGCAAGACGAGGTGAAGAGTCGATTCCTTTTGAATATTATAGTCCGAG 14955 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || || |||| || | || || ||||||||||||| |||||||||||| | ||| Sbjct 14954 AGAGTACGGCCGTCCTCTAATTGTTTTCCGGCAAAGATCAGACGCTGCTGATCCGGAGGA 14895 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290 | || || || || || ||| |||| || | ||||| || | || ||||||| Sbjct 14894 ATCCCCTCTTTATCTTGAATTTTCGCTTTCACGTTTTCGATGGTATCAGAGGGTTCCACC 14835 Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| || || || || || ||||| ||||| |||||||| ||||| Sbjct 14834 TCCAATGTGATGGTTTTACCGGTGAGAGTCTTGACGAAGATCTGCAT 14788 Score = 111 bits (122), Expect = 1e-19 Identities = 165/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| ||||| | |||| || |||| || || || ||| || || || ||||| Sbjct 14404 TTGCATCCCCCCGCGAAGTCGCAGTACCAAATGGAGAGTCGACTCTTTCTGAATATTGTA 14345 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 |||| ||| || |||| |||| || ||||| ||||| ||||| ||||||||||| Sbjct 14344 ATCGCTGAGAGTCCGTCCGTCCTCCAATTGTTTCCCCGCAAAAATCAACCGCTGCTGATC 14285 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 | || | || || || || ||||| ||| | || | || || || | | Sbjct 14284 GGGGGGAATTCCCTCTTTGTCTTGAATCTTAGCCTTAACGTTTTCGATAGTATCAGACGG 14225 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||||||| || || |||||||| ||||| ||||| |||||||||||||| Sbjct 14224 TTCCACCTCCAATGTGATGGTCTTTCCGGTGAGTGTCTTGACGAAGATTTGCAT 14171 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| ||||| | || | || || | ||| || || |||||||||||| || ||||| Sbjct 14790 CATCCCCCCGCGGAGACGTAAGACTAAGTGGAGAGTCGACTCCTTTTGGATATTATAATC 14731 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || ||| || | || || || || |||||||| || ||||| ||||||||||| | Sbjct 14730 GGACAGTGTACGTCCATCTTCGAGTTGTTTCCCGGCGAAAATCAATCGCTGCTGATCGGG 14671 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | ||| || || || || || ||| | || | ||||| ||| | ||| Sbjct 14670 GGGAATACCCTCTTTGTCTTGAATTTTGGCCTTTACATTTTCGATGGTATCGCTCGGTTC 14611 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || |||| ||||| || || || ||||| || || || ||||||||||| Sbjct 14610 AACTTCCAATGTAATGGTTTTACCGGTGAGTGTTTTGACAAAGATTTGCAT 14560 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| ||||| | || | || || | ||| || || ||||||||| || || ||||| Sbjct 13945 CATCCCCCCGCGGAGACGTAAGACTAAGTGGAGAGTCGACTCCTTTTGAATATTATAATC 13886 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || ||| || | || || || || || ||||| || ||||| ||||||||||| | Sbjct 13885 GGACAGTGTACGTCCATCTTCGAGTTGTTTTCCGGCGAAAATCAATCGCTGCTGATCGGG 13826 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | ||| | |||| | | | || || | || ||| | ||||| ||| | | Sbjct 13825 GGGAATACCCT-CTTTATCTTGAATTTTGGCCTTAACATTCTCAATGGTATCGCTCGGCT 13767 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || |||| ||||| || || || ||||| ||||| |||||||||||||| Sbjct 13766 CAACTTCCAATGTAATGGTTTTGCCGGTGAGAGTCTTGACGAAGATTTGCAT 13715 >seq32426 Length=2656 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | ||| || |||||||| || |||||||| || ||||| || | | Sbjct 207 CCTCCGCGCAGACGCAAGACGAGGTGAAGAGTCGATTCCTTTTGAATATTGTAGTCCGAG 266 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || || |||| |||| || || ||||||||||||| |||||| ||||| | ||| Sbjct 267 AGAGTACGGCCGTCCTCCAATTGTTTTCCGGCAAAGATCAGACGCTGTTGATCCGGAGGA 326 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCAC 44289 | || | |||| | | | || |||| | ||| | |||||||| | || |||||| Sbjct 327 ATCCCCT-CTTTATCTTGAATTTTGGCTTTGACATTCTCAATGGTGTCTGAGGGTTCCAC 385 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| || || || || || |||| || |||||||| |||||||| Sbjct 386 TTCCAAAGTGATAGTTTTGCCGATGAGTGTTTTCACGAATATTTGCAT 433 Score = 84.2 bits (92), Expect = 2e-11 Identities = 162/239 (68%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 44102 TATTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTG 44161 ||||| |||||| | || | ||||| | ||| || || ||||||||| || || Sbjct 425 TATTTGCATCCCCCGCGGAGACGTAACACTAAGTGGAGAGTCGACTCCTTTTGAATATTA 484 Query 44162 TAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221 |||| || ||| || | || || || || ||||||| |||||||| ||||||||| Sbjct 485 TAATTGGACAGTGTACGTCCATCTTCGAGTTGTTTCCCGGAGAAGATCAATCGCTGCTGA 544 Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCG 44281 || | ||| | ||| || || ||| ||| || ||| | || | ||||| ||| Sbjct 545 TCGGGAGGAATACCCTCTTTGTCCTGTATTTTGGCCTTTACATTTTCGATGGTATCGCTC 604 Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGAT 44340 | || || |||| ||||| | || || ||||| || || | | |||| |||| || Sbjct 605 GGCTCAACTTCCAATGTAATAGCTTTACCGGTGAGTGTTTTGAAAAGGATTGGCATTAT 663 >seq68991 Length=328 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 44183 TCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTT 44242 || |||| || || ||||||||||||| |||||| ||||| | || | ||||| || Sbjct 17 TCTTCCAATTGTTTTCCGGCAAAGATCAGACGCTGTTGATCCGGGGGAATCCCTTCTTTG 76 Query 44243 TCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATC 44302 ||| ||| ||| || | || | || || |||| || ||| || |||| ||||| Sbjct 77 TCCTGTATTTTCGCTTTGACATTTTCGATAGTATCGGAGGGTTCGACTTCCAATGTAATG 136 Query 44303 GTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || ||||| || |||||||| |||||||| Sbjct 137 GTTTTACCGGTGAGAGTTTTCACGAATATTTGCAT 171 >seq17817 Length=30685 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 44150 TTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATC 44209 ||||| || || ||||||| || || |||| |||| || ||||| ||||| || Sbjct 811 TTTTGTATATTATAATCGGAAAGAGTCCGTCCGTCTTCCAATTGTTTCCCCGCAAAAATG 752 Query 44210 AAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-C 44268 | | ||| ||||| | || | ||||| || ||| ||||||| |||| | ||| | Sbjct 751 AGTCTCTGTTGATCCGGGGGAATCCCTTCTTTGTCCTGTATCTTC-GCTTTTACATTCTC 693 Query 44269 TATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAA 44328 ||| || || | ||| ||||| | ||||| ||||||||||| | || ||||| || Sbjct 692 TATCGTATCACTCGGTTCGACCTCTAATGTAATGGTCTTTCCCGTTAATGTTTTCACAAA 633 Query 44329 GATTTGCAT 44337 ||||||||| Sbjct 632 GATTTGCAT 624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359374196445033