Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq21107 147 5e-30 seq32426 145 2e-29 seq68991 129 1e-24 seq17817 118 3e-21 seq14450 118 3e-21 >seq21107 Length=15695 Score = 147 bits (162), Expect = 5e-30 Identities = 169/227 (74%), Gaps = 3/227 (1%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| |||| || |||||||| | || || ||||||||||| | || |||||| Sbjct 13484 AAAATGC---AAATCTTTGTGAAAACATTAACCGGTAAAACGATCACTTTGGAAGTGGAA 13540 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || || || ||||| || || || ||||| |||||||||||||| || || ||| Sbjct 13541 CCGTCGGATACGATCGAAAATGTAAAGGCGAAGATACAGGACAAAGAAGGGATTCCCCCG 13600 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || || || |||| |||||||| || ||||| | ||||| ||| |||||||| ||||| Sbjct 13601 GATCAACAGAGACTCATCTTCGCGGGGAAACAATTGGAAGACGGACGGACTCTTTCCGAT 13660 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 ||||| | || ||||| || || || ||| | ||| | | ||||| Sbjct 13661 TATAATATTCAGAAAGAGTCGACTCTCCATTTGGTTCTTCGCCTCAG 13707 Score = 145 bits (160), Expect = 2e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || |||||||| || ||||| ||||| | || |||||| ||| || Sbjct 13946 CAGATCTTCGTTAAGACTCTCACCGGCAAAACCATCACTTTGGAAGTGGAACCCTCCGAT 14005 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || || ||||||||||| ||||| ||||| || ||||| || || Sbjct 14006 ACCATTGAGAATGTTAAGGCCAAGATTCAGGATAAAGAGGGAATTCCCCCGGATCAACAG 14065 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||| ||||| |||||||| | || || ||| ||||||| |||||| || | Sbjct 14066 AGACTTATTTTCGCGGGAAAACAATTGGAGGACGGACGGACTCTCAGCGATTACAATATT 14125 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 || ||||| || || || ||| | || ||| | ||||| Sbjct 14126 CAGAAAGAGTCGACTCTCCATTTAGTATTGCGTCTCAG 14163 Score = 145 bits (160), Expect = 2e-29 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || |||||||| || ||||| ||||| | ||||||||| ||| || Sbjct 14791 CAGATCTTCGTCAAGACTCTCACCGGTAAAACCATCACATTGGAGGTGGAACCCTCTGAT 14850 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||| ||| || ||||| || ||||| || || |||||||| ||||| Sbjct 14851 ACCATCGAAAACGTGAAAGCGAAAATTCAAGATAAAGAGGGGATTCCTCCGGATCAGCAG 14910 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||||||||| | || || || | ||||| | || ||||| | Sbjct 14911 CGTCTGATCTTTGCCGGAAAACAATTAGAGGACGGCCGTACTCTCTCGGACTATAATATT 14970 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 ||||| ||||| || || || || || ||| Sbjct 14971 CAAAAGGAATCGACTCTTCACCTCGTCTTG 15000 Score = 123 bits (136), Expect = 6e-23 Identities = 150/203 (74%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCA 177980 ||||| || || ||||| ||||| || ||||| || || | || || ||| ||| Sbjct 14563 CAAATCTTTGTCAAAACACTCACCGGTAAAACCATTACATTGGAAGTTGAACCGAGC--- 14619 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 || |||||||| || || || || ||||| |||||||| || || || || || ||| Sbjct 14620 GATACCATCGAAAATGTAAAGGCCAAAATTCAAGACAAAGAGGGTATTCCCCCCGATCAG 14679 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || ||| | || |||||||| ||||| |||||||||||| | || || |||||||||| Sbjct 14680 CAGCGATTGATTTTCGCCGGGAAACAACTCGAAGATGGACGTACACTGTCCGATTATAAT 14739 Query 178101 GTCCAAAAAGAATCAACACTGCA 178123 ||||||| || || || || || Sbjct 14740 ATCCAAAAGGAGTCGACTCTCCA 14762 Score = 120 bits (132), Expect = 7e-22 Identities = 149/202 (74%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 ||||| ||||| || |||||||| || ||||| || || | || || || || || Sbjct 13718 CAAATCTTCGTCAAGACTCTCACCGGCAAAACCATTACATTGGAAGTTGA--GCCGAGCG 13775 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | ||||| ||||| || || || ||||| || ||||| || || || || || |||| Sbjct 13776 ATACCATTGAGAATGTTAAGGCCAAAATTCAAGATAAAGAGGGTATTCCCCCCGATCAGC 13835 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | ||| | || |||||||||||||| |||||||||||| | || || |||||||||| Sbjct 13836 AGCGATTGATTTTCGCCGGAAAACAACTCGAAGATGGACGTACACTGTCCGATTATAATA 13895 Query 178102 TCCAAAAAGAATCAACACTGCA 178123 | ||||| || || || || || Sbjct 13896 TTCAAAAGGAGTCGACTCTCCA 13917 >seq32426 Length=2656 Score = 145 bits (160), Expect = 2e-29 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||||||||| |||| || ||||| ||||| | || |||||| ||||||| Sbjct 430 CAAATATTCGTGAAAACACTCATCGGCAAAACTATCACTTTGGAAGTGGAACCCTCAGAC 371 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| |||||| || ||||| || ||||| || || |||||||| || || Sbjct 370 ACCATTGAGAATGTCAAAGCCAAAATTCAAGATAAAGAGGGGATTCCTCCGGATCAACAG 311 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||||||||| | || || || | ||||| | || || || | Sbjct 310 CGTCTGATCTTTGCCGGAAAACAATTGGAGGACGGCCGTACTCTCTCGGACTACAATATT 251 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 ||||| ||||| || || || || || ||| Sbjct 250 CAAAAGGAATCGACTCTTCACCTCGTCTTG 221 Score = 104 bits (114), Expect = 6e-17 Identities = 138/190 (73%), Gaps = 4/190 (2%) Strand=Plus/Minus Query 177936 AAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG--ACACCATCGAGA 177993 ||||| ||||| || ||| | || || | || || || || || | |||||||| | Sbjct 645 AAAACACTCACCGGTAAAGCTATTACATTGGAAGTTGA--GCCGAGCGATACCATCGAAA 588 Query 177994 ACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCT 178053 | || || || || ||||||||||| || || ||||| || ||||| ||| | |||| Sbjct 587 ATGTAAAGGCCAAAATACAGGACAAAGAGGGTATTCCTCCCGATCAGCAGCGATTGATCT 528 Query 178054 TCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAAT 178113 || |||| ||||| |||||||||||| | || || || ||||||| | ||||| || | Sbjct 527 TCTCCGGGAAACAACTCGAAGATGGACGTACACTGTCCAATTATAATATTCAAAAGGAGT 468 Query 178114 CAACACTGCA 178123 | || || || Sbjct 467 CGACTCTCCA 458 >seq68991 Length=328 Score = 129 bits (142), Expect = 1e-24 Identities = 127/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||||||||||||||| || ||||| || || | || || ||| ||| || Sbjct 168 CAAATATTCGTGAAAACTCTCACCGGTAAAACCATTACATTGGAAGTCGAACCCTCCGAT 109 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || |||||| || || |||||||||||||| || || ||||| || || Sbjct 108 ACTATCGAAAATGTCAAAGCGAAAATACAGGACAAAGAAGGGATTCCCCCGGATCAACAG 49 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 || || ||||| ||||||||||| | ||||||||| | || || Sbjct 48 CGTCTGATCTTTGCCGGAAAACAATTGGAAGATGGACGTACACT 5 >seq17817 Length=30685 Score = 118 bits (130), Expect = 3e-21 Identities = 144/196 (73%), Gaps = 3/196 (2%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| |||| || |||||||| | || ||||| || || || | ||||| ||| Sbjct 621 AAAATGC---AAATCTTTGTGAAAACATTAACGGGAAAGACCATTACATTAGAGGTCGAA 677 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || || || ||||| || ||| ||||| |||||||||||||| || || ||| Sbjct 678 CCGAGTGATACGATAGAGAATGTAAAAGCGAAGATACAGGACAAAGAAGGGATTCCCCCG 737 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || || || |||| || || || || ||||| | ||||| ||| |||||||| ||||| Sbjct 738 GATCAACAGAGACTCATTTTTGCGGGGAAACAATTGGAAGACGGACGGACTCTTTCCGAT 797 Query 178095 TATAACGTCCAAAAAG 178110 ||||| | ||||||| Sbjct 798 TATAATATACAAAAAG 813 >seq14450 Length=5806 Score = 118 bits (130), Expect = 3e-21 Identities = 144/196 (73%), Gaps = 3/196 (2%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| |||||||||| || || | || ||||| || ||||| | || |||||| Sbjct 5471 AAAATGC---AAATTTTCGTTAAGACATTAACGGGAAAGACCATCACTTTGGAAGTGGAA 5415 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || || ||||| ||||| || || ||||| ||||| ||||| ||||| || ||| Sbjct 5414 CCGTCTGATACCATTGAGAATGTTAAGGCGAAGATACAGGATAAAGAGGGAATTCCCCCG 5355 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || || || |||| || ||||| || ||||| | ||||| ||| ||||||| ||| Sbjct 5354 GATCAACAGAGACTCATTTTCGCGGGGAAACAATTGGAAGACGGACGGACTCTGAGTGAT 5295 Query 178095 TATAACGTCCAAAAAG 178110 ||||| | ||||||| Sbjct 5294 TATAATATACAAAAAG 5279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1201565082320106