Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypochthonius_20rufulus_20[genbank_20GCA_5F000988845.1_202015-05-06] 140,449 sequences; 172,365,132 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq68991 95.1 1e-14 seq32426 84.2 2e-11 >seq68991 Length=328 Score = 95.1 bits (104), Expect = 1e-14 Identities = 111/149 (74%), Gaps = 1/149 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||||||||||| ||| || || |||||| ||||||||||| || | Sbjct 173 CCCCCGCGGAGACGTAACACCAAATGAAGTGTCGACTCCTTTTGAATGTTATAATCACTG 232 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || || | || || ||||| || ||||| |||||||| |||| |||| Sbjct 233 AGTGTACGTCCATCTTCCAATTGTTTCCCGGCAAAGATCAGACGCTGTTGATCCGGGGGA 292 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT 41784 | | ||| || | | ||| |||| |||| Sbjct 293 ATACCCTCTTTAT-CTTGAATTTTAGCTT 320 >seq32426 Length=2656 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||||||||| | || || || |||||| ||||| ||||| | ||| Sbjct 434 CCCCCGCGGAGACGTAACACTAAGTGGAGAGTCGACTCCTTTTGAATATTATAATTGGAC 493 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || ||||| || || |||| ||| |||| ||||| || || | ||| Sbjct 494 AGTGTACGTCCATCTTCGAGTTGTTTCCCGGAGAAGATCAATCGCTGCTGATCGGGAGGA 553 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||| |||||| || |||| || | || | | || ||||||| ||| || Sbjct 554 ATACCCTCTTTGTCC-TGTATTTTGGCCTTTACATTTTCGATGGTATCGCTCGGCTCAAC 612 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTT 41847 |||| || || | |||||| || || || || Sbjct 613 TTCCAATGTAATAGCTTTACCGGTGAGTGTTTT 645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461492373318800