Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq2028 320 2e-82 seq4438 89.7 5e-13 >seq2028 Length=154558 Score = 320 bits (354), Expect = 2e-82 Identities = 599/875 (68%), Gaps = 5/875 (1%) Strand=Plus/Plus Query 16694 TTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCCATGAAATCAAAAGGATTA 16753 ||||| |||||||| ||||| || ||| ||| || || ||| || ||||| ||||| Sbjct 59797 TTTTCAAAAAAGTTTGTTTTACCTTCTGTAGAAATGATCGTCATAAAGTCAAACGGATTC 59856 Query 16754 GTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAATCTATCCGCTACAAATTCT 16813 || || | | ||||| | | || | ||| | || | ||| |||||||||||| Sbjct 59857 GTTGCACCATAGATTTTCTTGCAGCCTAATTCACTTAACAAACGATCAGCTACAAATTCT 59916 Query 16814 ATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTACCGGAAGAGCTTCCGTC 16873 ||||| || ||||| |||| ||| |||||||| || |||| || || | ||| || | | Sbjct 59917 ATATACTGACACATCAATTTGCAATTCATTCCAATCAGACTGACTGGCAAAGCCTCAGAC 59976 Query 16874 AAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAGCAACTCGTTCCTCGGAC 16933 || || ||| ||||| ||| || || ||||||||| | |||| ||| | || Sbjct 59977 AAGAACTCTTGTTCTATTGTAACTGCATCTGCAATAATACTGGTTACTCTTTCTTGTGAT 60036 Query 16934 GGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCT 16993 ||| | || | |||||| || | | ||||| ||||| ||||||| || || ||| Sbjct 60037 GGTTTCTGATGCAGATGTGAGAATAGTAAGCATGCAAAATCACAATGTAGACCTTCATCT 60096 Query 16994 CTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAA 17053 ||| || | ||| || |||||||| || |||||||| || |||||||||||||| Sbjct 60097 CTGGATATCAATTCATTTGAAAATGTTAAACCGGGCATAAGACCACGTTTCTTTAACCAG 60156 Query 17054 AATATCGCGGCGAA-CGACC-CAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTA 17111 || ||||| || || | ||| | |||| || || || || |||| ||||| || | | Sbjct 60157 AAAATCGCTGCAAAGCTACCACTGAAA--AAAATGCCTTCAACGGCAGCAAAAGCCACCA 60214 Query 17112 ATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTT 17171 ||| |||| || ||| | ||| | |||||| || | |||| || ||||| | Sbjct 60215 ATCTTTCGCCGAACGAGGATGTTTTCGAGCTAATCCACTTTAGGGCCCAATCAGCTTTCT 60274 Query 17172 GCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGA 17231 ||| | || ||| ||||| || || ||||| || ||||||||| | | ||| Sbjct 60275 TCTTAACACACGGCATGGTTTCAATAGCGTTAAACAAGAACTCTTTTTCATTGGGATCGC 60334 Query 17232 TTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCT 17291 | |||||||| || || ||| |||||||||||| || || || || || || || |||| Sbjct 60335 TGATATACGTTTCAATAAGTTTGCTGTACATTTCAGAATGGATATTTTCAATTGCAATCT 60394 Query 17292 GAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTA 17351 | ||||| ||||| || || ||||| | | ||||||||| ||| |||||| | | Sbjct 60395 GGAATCCATAAAAACAACGAGCTTCAGTCACTTGAACTTCTTGACTGAAACGTTCCACAA 60454 Query 17352 GATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAAT 17411 |||| || || || || || || || || ||||| || || | ||| |||||||| Sbjct 60455 GATTCTCATTTACAATACCATCTGAGGCAGCAAAAAAAGCTAACACGTGCGAAATGAAAT 60514 Query 17412 ATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTT 17471 | ||| || | | | || ||||| || ||| | || | |||||||| | Sbjct 60515 GTCGTTCTTCAGATTTCAGTTTCTCCCAGTGTCGTAGATCATGGGTGAGGTCCACTTCCT 60574 Query 17472 CGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAATATCATTGTATTGTA 17531 ||| |||||||| ||| | || | || || | | ||||||||| | ||| | Sbjct 60575 CGGTAGTCCAAAAGGAAGCTTCAGCTTCCTTGTATTTCTGCCAAATATCTGGGAATTCAA 60634 Query 17532 TGGGGAATACAACATATCTATCTAAGGATTCCTTT 17566 | ||||||| |||| |||| || | || || |||| Sbjct 60635 TTGGGAATAAAACAAATCT-TCGAGGGTTTTCTTT 60668 >seq4438 Length=69644 Score = 89.7 bits (98), Expect = 5e-13 Identities = 161/227 (71%), Gaps = 10/227 (4%) Strand=Plus/Minus Query 119785 CATATATCGTATCTTTCCGAACACGGTACGTTCCTTCCACGCTCTGTCGTGGAGCCCCGC 119844 |||||| ||||| ||||| || | | || || ||||| || ||||||| | || | Sbjct 7050 CATATAACGTATTTTTCCAAAAATTTTTCGCTCTTTCCAACCTTGATCGTGGA-CACCAC 6992 Query 119845 TA--CGGCC-CATAGGCA-TCCCACGTATCCGTTGGGATCCGTTCCATCTAACTCGTATT 119900 | || || ||| || ||| || ||||||| ||||| ||||||| || ||||| Sbjct 6991 AAATCGACCACAT---CACTCCAACAAATCCGTTCGGATCGTTTCCATCCAAAGCGTATA 6935 Query 119901 TATCGTTTAAGTAGA-TACAGACGCTTAACGCACTTTCAGGAGTCTCGCTCCATTCCAGT 119959 ||| |||| | | | || || || || | || ||| | || |||||||||| Sbjct 6934 CATCATTTAGCCACAATGCAATTTCTAAA-GCTTTGTCTGGACTTTCCGTCCATTCCAGA 6876 Query 119960 AtttttttAGCCCAGTACATACGTAAGTATCCATGCATTTTACCTTC 120006 ||||||||| |||||||||||| | ||| ||||| ||||||||||| Sbjct 6875 ATTTTTTTACACCAGTACATACGCATGTACCCATGTATTTTACCTTC 6829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517442763689280