Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq2028 340 2e-88 >seq2028 Length=154558 Score = 340 bits (376), Expect = 2e-88 Identities = 609/878 (69%), Gaps = 11/878 (1%) Strand=Plus/Plus Query 15932 TTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAAGGGATTA 15991 ||||| || ||||| ||||| || ||| ||| || | |||||| ||||| ||||| Sbjct 59797 TTTTCAAAAAAGTTTGTTTTACCTTCTGTAGAAATGATCGTCATAAAGTCAAACGGATTC 59856 Query 15992 GTAGCTGAAAATATCTTAGAGTACCCCAGTTC-CGTAACTAATCTATCTGCTACAAATTC 16050 || || | | || || | | || | ||| | |||| || | ||| ||||||||||| Sbjct 59857 GTTGCACCATAGATTTTCTTGCAGCCTAATTCACTTAACAAA-CGATCAGCTACAAATTC 59915 Query 16051 TATATATTGACACATTAAGTCGCAATTAATTCCTATAAGTCGTACCGGAAGAGCTTTTGT 16110 |||||| |||||||| || | |||||| ||||| || || | || || | ||| | | Sbjct 59916 TATATACTGACACATCAATTTGCAATTCATTCCAATCAGACTGACTGGCAAAGCCTCAGA 59975 Query 16111 TAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGGTGGCTCGTGTTTCAGA 16170 || || | ||||||||| ||| || ||| ||| ||| ||| ||| | || || Sbjct 59976 CAAGAACTCTTGTTCTATTGTAACTGCATCTGCAATAATACTGGTTACTCTTTCTTGTGA 60035 Query 16171 CGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTC 16230 ||| | || | || ||| || | || || || || || |||||||| ||||| || Sbjct 60036 TGGTTTCTGATGCAGATGTGAGAATAGTAAGCATGCAAAATCACAATGTAGACCTTCATC 60095 Query 16231 TCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCA 16290 |||| || | ||| || ||||| ||||| || ||||| || |||||||||||||| Sbjct 60096 TCTGGATATCAATTCATTTGAAAATGTTAAACCGGGCATAAGACCACGTTTCTTTAACCA 60155 Query 16291 GAATATCGCAGCAAA-TGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTA 16349 ||| ||||| ||||| ||| | ||| || || || ||||| | |||||||| | | Sbjct 60156 GAAAATCGCTGCAAAGCTACCACTGAAA-AAAATGCCTTCAACGGCAGCAAAAGCCACCA 60214 Query 16350 ATCGTTCCGCGTACGTAGCATCTTTATTA-CGAATCCATTTCTGTACCCATTCGGCTTTT 16408 ||| ||| || ||| || || ||| | | |||||| || | |||| || ||||| Sbjct 60215 ATCTTTCGCCGAACG-AGGATGTTTTCGAGCTAATCCACTTTAGGGCCCAATCAGCTTTC 60273 Query 16409 TGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCG 16468 | || | ||| ||| ||||| || || |||||||| ||||||||| | |||| Sbjct 60274 TTCTTAACACACGGCATGGTTTCAATAGCGTTAAACAAGAACTCTTTTTCATTGGGATCG 60333 Query 16469 ATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATC 16528 | |||||||| ||||| ||| ||||||||||| || || || || || || || ||| Sbjct 60334 CTGATATACGTTTCAATAAGTTTGCTGTACATTTCAGAATGGATATTTTCAATTGCAATC 60393 Query 16529 TGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTC--CACGTAAAATCGTTCCG 16586 || |||||||| || || ||||| || | | ||| ||||| || ||| |||||| Sbjct 60394 TGGAATCCATAAAAACAACGAGCTTCAGTCACTTGAACTTCTTGACTGAAA--CGTTCCA 60451 Query 16587 CCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGA 16646 | || |||||||| || ||||| || ||||||||||| || || | |||| ||||| Sbjct 60452 CAAGATTCTCATTTACAATACCATCTGAGGCAGCAAAAAAAGCTAACACGTGCGAAATGA 60511 Query 16647 AATATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTT 16706 ||| | ||| |||||| | || | | ||| | | || ||| | || | ||||||| Sbjct 60512 AATGTCGTTCTTCAGATTTCAGTTTCTCCCAGTGTCGTAGATCATGGGTGAGGTCCACTT 60571 Query 16707 CTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTATT 16766 | || | ||||||||| ||| | || | || || | | ||||||||| | ||| Sbjct 60572 CCTCGGTAGTCCAAAAGGAAGCTTCAGCTTCCTTGTATTTCTGCCAAATATCTGGGAATT 60631 Query 16767 GTATGGGAAATACGACGTATCTATCTAAGGATTCCTTT 16804 || || |||| || |||| || | || || |||| Sbjct 60632 CAATTGGGAATAAAACAAATCT-TCGAGGGTTTTCTTT 60668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511312781958720