Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq173 138 9e-28 >seq173 Length=58411 Score = 138 bits (152), Expect = 9e-28 Identities = 346/519 (67%), Gaps = 14/519 (3%) Strand=Plus/Minus Query 18615 TTTCCTCTTTTAACTACAAAGCGTGTTTTTTGGAGGGCCGTCGTGGAAGAGTTGTTATGG 18674 ||||| || | || ||||| || || || |||||||| || || ||||| |||| ||| Sbjct 29716 TTTCCACTCCTTACAACAAAACGGGTGTTCTGGAGGGCTGTAGTTGAAGAACTGTTGTGG 29657 Query 18675 TTTATCCGCGGGT---CAACCG-ATTCCAAAGAACTCGCCGCTAAAGATATACACATATG 18730 || || | || ||| || ||| |||||| || ||| || | ||||| || Sbjct 29656 TTCATAAGAGGTAGCACAAACGCATTT----GAACTCAGCGAGAAAAATGTTCACATTTG 29601 Query 18731 GGAT--ATATACGGATCGAGCAAATTTCTAAATAGGAATGGCTTCCATAAAAGACACACG 18788 |||| | ||| ||| | |||| ||| || | ||| | | | | | | Sbjct 29600 GGATGCAAATAGTAGTCGTG--AATTCCTAGATTCAATTGGACTAACTGATCGTGATGAG 29543 Query 18789 GGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAG-A 18847 || || | || || || || || ||||| ||| | || | ||| || ||||| || | | Sbjct 29542 GGCGATTTGGGACCAATATATGGTTTCCAATGGCGTCACTATGGTGCTGAATACAAGGGA 29483 Query 18848 CTGTCAATCAAACTATTTACAGCAAGGAATCGATCAGCTGCAAACTGTTATAGATACAAT 18907 || || || || ||| | | |||| || ||||| || | || || |||| || Sbjct 29482 ATG-CATTCGAATTATACAAATAAAGGCATTGATCAATTGGCACAGGTAATCAATACCAT 29424 Query 18908 TAAAACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCCC 18967 ||||| || || | || |||||||||| | | |||||||| | |||| |||| Sbjct 29423 CAAAACTAATTCAACAGATAGAAGAATGATTATGTGTGCATGGAATCCTACGGATCTCCC 29364 Query 18968 CTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATT 19027 ||||| ||||| || || || ||| |||||||| || || || |||||||| Sbjct 29363 TGAAATGGCTCTACCGCCTTGCCATTGTTTAGTGCAGTTTTATGTGGCCAATGGTGAATT 29304 Query 19028 ATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGC 19087 |||||| || |||| |||||||| | |||||||| ||||| || || || || ||||| Sbjct 29303 ATCCTGTCAGTTATATCAGAGATCAGCTGATATGGGACTTGGAGTTCCTTTTAATATTGC 29244 Query 19088 TGGATATGCACTTCTTACCTACATAGTAGCGCATGTTAC 19126 | | ||||| | | || || || |||| |||||||| Sbjct 29243 TAGCTATGCTTTGTTAACTTATATGATAGCTCATGTTAC 29205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399426603091320