Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22]
15,896 sequences; 151,272,366 total letters
Query= NC_001348.1
Length=124884
Score E
Sequences producing significant alignments: (Bits) Value
seq173 138 9e-28
>seq173
Length=58411
Score = 138 bits (152), Expect = 9e-28
Identities = 346/519 (67%), Gaps = 14/519 (3%)
Strand=Plus/Minus
Query 18615 TTTCCTCTTTTAACTACAAAGCGTGTTTTTTGGAGGGCCGTCGTGGAAGAGTTGTTATGG 18674
||||| || | || ||||| || || || |||||||| || || ||||| |||| |||
Sbjct 29716 TTTCCACTCCTTACAACAAAACGGGTGTTCTGGAGGGCTGTAGTTGAAGAACTGTTGTGG 29657
Query 18675 TTTATCCGCGGGT---CAACCG-ATTCCAAAGAACTCGCCGCTAAAGATATACACATATG 18730
|| || | || ||| || ||| |||||| || ||| || | ||||| ||
Sbjct 29656 TTCATAAGAGGTAGCACAAACGCATTT----GAACTCAGCGAGAAAAATGTTCACATTTG 29601
Query 18731 GGAT--ATATACGGATCGAGCAAATTTCTAAATAGGAATGGCTTCCATAAAAGACACACG 18788
|||| | ||| ||| | |||| ||| || | ||| | | | | | |
Sbjct 29600 GGATGCAAATAGTAGTCGTG--AATTCCTAGATTCAATTGGACTAACTGATCGTGATGAG 29543
Query 18789 GGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAG-A 18847
|| || | || || || || || ||||| ||| | || | ||| || ||||| || | |
Sbjct 29542 GGCGATTTGGGACCAATATATGGTTTCCAATGGCGTCACTATGGTGCTGAATACAAGGGA 29483
Query 18848 CTGTCAATCAAACTATTTACAGCAAGGAATCGATCAGCTGCAAACTGTTATAGATACAAT 18907
|| || || || ||| | | |||| || ||||| || | || || |||| ||
Sbjct 29482 ATG-CATTCGAATTATACAAATAAAGGCATTGATCAATTGGCACAGGTAATCAATACCAT 29424
Query 18908 TAAAACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCCC 18967
||||| || || | || |||||||||| | | |||||||| | |||| ||||
Sbjct 29423 CAAAACTAATTCAACAGATAGAAGAATGATTATGTGTGCATGGAATCCTACGGATCTCCC 29364
Query 18968 CTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATT 19027
||||| ||||| || || || ||| |||||||| || || || ||||||||
Sbjct 29363 TGAAATGGCTCTACCGCCTTGCCATTGTTTAGTGCAGTTTTATGTGGCCAATGGTGAATT 29304
Query 19028 ATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGC 19087
|||||| || |||| |||||||| | |||||||| ||||| || || || || |||||
Sbjct 29303 ATCCTGTCAGTTATATCAGAGATCAGCTGATATGGGACTTGGAGTTCCTTTTAATATTGC 29244
Query 19088 TGGATATGCACTTCTTACCTACATAGTAGCGCATGTTAC 19126
| | ||||| | | || || || |||| ||||||||
Sbjct 29243 TAGCTATGCTTTGTTAACTTATATGATAGCTCATGTTAC 29205
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 399426603091320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |