Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq173 210 2e-49 >seq173 Length=58411 Score = 210 bits (232), Expect = 2e-49 Identities = 368/524 (70%), Gaps = 10/524 (2%) Strand=Plus/Plus Query 101746 TAGATTAGTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGG 101805 |||||| || |||||||| ||||| ||||||| | || |||||||||||| ||||| || Sbjct 29198 TAGATTGGTAACATGAGCTATCATATAAGTTAACAAAGCATAGCTAGCAATATTAAAAGG 29257 Query 101806 CACTCCTAACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACA 101865 ||||| | ||||||||||||||||| ||||| | |||||||| | | |||| Sbjct 29258 AACTCCAAGTCCCATATCAGCTGATCTCTGATATAACTGACAGGATAATTCACCATTGGC 29317 Query 101866 GACATAAAATTG-ACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAA 101924 |||||||| || ||| || | ||| |||||||| | |||||| ||| | || | | Sbjct 29318 CACATAAAACTGCACTAAACA-ATGGCAAGGCGGTAGAGCCATTTCAGGGAGATCCGTAG 29376 Query 101925 CATTCCAAGCACACATTAACATCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCA 101984 |||||| |||||||| | ||| ||||||||||| | || ||||| || |||| || | Sbjct 29377 GATTCCATGCACACATAATCATTCTTCTATCTGTTGAATTAGTTTTGATGGTATTGATTA 29436 Query 101985 ACTGTTTTAATTGGTCAACTCCTTCTCCTTTATAA-TCGCGCCCAACACCTTTATATTCT 102043 |||| ||||| |||| |||| | ||||| ||| | | || || ||||| Sbjct 29437 CCTGTGCCAATTGATCAATGCCTTTATTTGTATAATTCGAATGC-ATTCCCTTGTATTCA 29495 Query 102044 GCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTTCATCTCTGTCA 102103 || || | || | ||| || || ||||| | ||||| | ||| || ||||| | ||| Sbjct 29496 GCACCATAGTGACGCCATTGGAAACCATATATTGGTCCCAAATCGCCCTCATCACGATCA 29555 Query 102104 TAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAATGTGCAC-GCC 102162 | |||| | ||||| ||| | | | ||| |||||||||||||| || Sbjct 29556 GTTAGTCCAATTGAATCTAGGAATTCACGACTACTATTTGCATCCCAAATGTGAACATTT 29615 Query 102163 AGCT-GCTGATAGCTC-TTTGCTGTCAGTAGATCCTCTGATAAACCACAACAGTTCTTCA 102220 || |||| || || ||| || || ||||| || |||||||||||||||||| Sbjct 29616 TTCTCGCTG--AGTTCAAATGC-GTTTGTGCTACCTCTTATGAACCACAACAGTTCTTCA 29672 Query 102221 ACAACACCTCTCCAAAATACTCTCTTAGTAGTTAAAAGTGGAAA 102264 || ||| | ||||| || || | || || || | |||||||| Sbjct 29673 ACTACAGCCCTCCAGAACACCCGTTTTGTTGTAAGGAGTGGAAA 29716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361181213901896