Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq173 241 9e-59 >seq173 Length=58411 Score = 241 bits (266), Expect = 9e-59 Identities = 390/543 (72%), Gaps = 26/543 (5%) Strand=Plus/Plus Query 97117 GTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCT 97176 || ||||| || |||||| ||||||| | || |||||||||||| |||||||| || || Sbjct 29205 GTAACATGAGCTATCATATAAGTTAACAAAGCATAGCTAGCAATATTAAAAGGAACTCCA 29264 Query 97177 AGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAA 97236 |||||||||||||||||||| ||||||||||||||||| | | |||| ||||||| Sbjct 29265 AGTCCCATATCAGCTGATCTCTGATATAACTGACAGGATAATTCACCATTGGCCACATAA 29324 Query 97237 AACTG-ACTCAATACATGACAGGGGGGCAACGCCATTTTTGGAACATC--TAAGACATTC 97293 ||||| ||| || | ||| || || || | ||||||| || | ||| || | |||| Sbjct 29325 AACTGCACTAAACA-ATGGCAAGGCGGTAGAGCCATTTCAGGGAGATCCGTAGG--ATTC 29381 Query 97294 CAAGCACACATCAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTAATTATCTGC 97353 || |||||||| | |||||||||||| |||| || || | |||||||| |||| ||| Sbjct 29382 CATGCACACATAATCATTCTTCTATCTGTTGAATTAGTTTTGATGGTATTGATTACCTGT 29441 Query 97354 TTTAATTGATCAACGCCTTCTCCACCATAATT---GTGCTTAAGACCTTGATATTCTGCT 97410 |||||||||| ||||| |||||| ||| | ||||| ||||| || Sbjct 29442 GCCAATTGATCAATGCCTTTATTTGTATAATTCGAATGC--ATTCCCTTG-TATTCAGCA 29498 Query 97411 CCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATCACAG 97470 ||| | || | ||||||||| ||||| | ||||| | || || || || | |||| Sbjct 29499 CCATAGTGACGCCATTGGAAACCATATATTGGTCCCAAATCGCCCTCATCACGATCAGTT 29558 Query 97471 AAACCAAGCTTATCTA--AAT--AGGACCTAGATCCATTTGCATCCCAAATGTGCACACC 97526 | |||| ||||| ||| | || ||| | |||||||||||||||||| ||| Sbjct 29559 AGTCCAATTGAATCTAGGAATTCACGA-CTA---CTATTTGCATCCCAAATGTGAACA-- 29612 Query 97527 AGATGCT-GC-AAGCTC-TTTGCTGTCAGTAGATCCTCTGATAAACCACAACAATTCTTC 97583 | || || || || ||| || || ||||| || |||||||||| |||||| Sbjct 29613 TTTTTCTCGCTGAGTTCAAATGC-GTTTGTGCTACCTCTTATGAACCACAACAGTTCTTC 29671 Query 97584 CACAACACCTCTCCAAAATACTCTCTTAGTTGTTAAGAGAGGAAAATCCTTTTCTAAGCT 97643 || ||| | ||||| || || | || ||||| | ||| |||||| || || |||| | Sbjct 29672 AACTACAGCCCTCCAGAACACCCGTTTTGTTGTAAGGAGTGGAAAAGTCTCTTTTAAGTT 29731 Query 97644 GTA 97646 ||| Sbjct 29732 GTA 29734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346716816668720