Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22]
15,896 sequences; 151,272,366 total letters
Query= NC_001993.1
Length=236120
Score E
Sequences producing significant alignments: (Bits) Value
seq173 187 4e-42
seq2259 113 7e-20
seq4409 104 4e-17
seq1411 89.7 8e-13
>seq173
Length=58411
Score = 187 bits (206), Expect = 4e-42
Identities = 256/356 (72%), Gaps = 9/356 (3%)
Strand=Plus/Plus
Query 205435 TTTAAATTAGTTAAATGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAAT 205494
|||| ||| || | ||| || ||||||||||| || ||| ||| ||||||| ||||||
Sbjct 29196 TTTAGATTGGTAACATGAGCTATCATATAAGTTAACAAAGCATAGCTAGCAATATTAAAA 29255
Query 205495 GGTACACCTAAACCCATATCAGCTGATCTTTGATACATTTGACATGTAAGATATTTATTA 205554
|| || || | ||||||||||||||||| ||||| | ||||| | | ||| | |
Sbjct 29256 GGAACTCCAAGTCCCATATCAGCTGATCTCTGATATAACTGACAGGATA---ATTCACCA 29312
Query 205555 TTAATTACATGAAATTGTACAAAACAATGACAAGGTGGTATAACCATATTTTCA---ACA 205611
|| |||| ||| || || |||||||| ||||| |||| | |||| |||| | |
Sbjct 29313 TTGGCCACATAAAACTGCACTAAACAATGGCAAGGCGGTAGAGCCAT---TTCAGGGAGA 29369
Query 205612 TCTATAGGATTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtttattttttatttta 205671
|| |||||||||| || | || || ||||| | | ||| |||| || ||
Sbjct 29370 TCCGTAGGATTCCATGCACACATAATCATTCTTCTATCTGTTGAATTAGTTTTGATGGTA 29429
Query 205672 tttatAATATGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATA 205731
|| || | |||| |||||||||| |||| |||||||||||| | || ||| | |
Sbjct 29430 TTGATTACCTGTGCCAATTGATCAATGCCTTTATTTGTATAATTCGAATGCATTCCCTTG 29489
Query 205732 TATTTAGCACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTC 205787
|||| ||||||| | ||||||||||| |||||||| | ||| || ||||| || ||
Sbjct 29490 TATTCAGCACCATAGTGACGCCATTGGAAACCATATATTGGTCCCAAATCGCCCTC 29545
>seq2259
Length=79244
Score = 113 bits (124), Expect = 7e-20
Identities = 166/235 (71%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595
|| |||||||| || | || || || || || || || || || | ||| | ||| ||
Sbjct 78291 ACGATGCAAATTTTCGTGAAAACTCTCACTGGTAAGACCATCACCCTTGAGGTCGAACCA 78232
Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655
|| || ||| ||| |||| ||||||||| || ||||||||||| || || ||
Sbjct 78231 TCCGACACCATTGAAAATGTAAAGGCGAAAATTCAGGACAAAGAAGGTATCCCCCCAGAC 78172
Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715
|||||| | | || ||||| || |||||| | |||||| |||| || | || |||
Sbjct 78171 CAACAACGTTTGATCTTTGCTGGTAAACAACTGGAGGATGGTCGCACCCTCTCCGACTAT 78112
Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTA 124770
||||| ||||| || || || |||| ||||| | | || ||||||||||||
Sbjct 78111 AATATCCAAAAGGAGTCCACCCTGCACTTGGTACTCAGATTGAGAGGTGGTATTA 78057
>seq4409
Length=33873
Score = 104 bits (114), Expect = 4e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595
|||||||| || || ||||||| |||| ||||| || || ||| | ||| | ||| |
Sbjct 17754 ACAATGCAGATTTTCGTAAAGACCTTAACGGGCAAGACCATCACTCTTGAGGTCGAACCG 17813
Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655
|| || ||| ||| |||| |||||||| || || ||||| || || || ||
Sbjct 17814 TCGGACACTATTGAAAATGTAAAGGCAAAAATTCAGGACAAGGAAGGAATTCCGCCAGAC 17873
Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715
|| || || | || || || || |||||| | || || | || || || ||||||
Sbjct 17874 CAGCAGAGATTGATCTTCGCCGGCAAACAACTGGAAGACGGACGGACTTTGTCCGATTAT 17933
Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765
||||||||||| ||||| || || |||||||| | || | |||||||
Sbjct 17934 AATATTCAAAAGGAATCTACCTTACATTTGGTGCTTCGACTGAGAGGTGG 17983
>seq1411
Length=135556
Score = 89.7 bits (98), Expect = 8e-13
Identities = 120/167 (72%), Gaps = 0/167 (0%)
Strand=Plus/Plus
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
||||| ||| ||| ||||| ||||||||||| |||||||| || || || |||||
Sbjct 108648 GATACTATTGAAAATGTAAAAGCCAAAATTCAAGACAAAGAAGGAATTCCTCCAGATCAG 108707
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
|| ||| | || || || ||||||||| | || ||| | || || | || || ||
Sbjct 108708 CAGAGGTTGATCTTCGCTGGAAAACAACTTGAAGATGGACGTACTCTCTCTGACTACAAC 108767
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765
|| ||||| || || || || |||||||| | ||| | || |||||
Sbjct 108768 ATCCAAAAGGAGTCCACCTTACATTTGGTGCTCCGTCTTCGTGGTGG 108814
Score = 84.2 bits (92), Expect = 3e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 124635 AAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGAT 124694
|| |||||||| || || || ||||| || | |||||||| |||||||||||||| |||
Sbjct 108458 AAGGAAGGTATTCCTCCAGACCAACAGAGATTGATTTTTGCCGGAAAACAATTAGAAGAT 108517
Query 124695 AGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGT 124754
| || || | || || || ||||| || || ||||| ||||| |||||| | |
Sbjct 108518 GGACGTACCCTTTCTGACTACAACATTCAGAAGGAGTCAACATTGCACTTGGTTCTGAGA 108577
Query 124755 TTACGAGGTGGTAT 124768
||| |||| || ||
Sbjct 108578 TTAAGAGGCGGAAT 108591
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 755305890892800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |