Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq173 187 4e-42 seq2259 113 7e-20 seq4409 104 4e-17 seq1411 89.7 8e-13 >seq173 Length=58411 Score = 187 bits (206), Expect = 4e-42 Identities = 256/356 (72%), Gaps = 9/356 (3%) Strand=Plus/Plus Query 205435 TTTAAATTAGTTAAATGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAAT 205494 |||| ||| || | ||| || ||||||||||| || ||| ||| ||||||| |||||| Sbjct 29196 TTTAGATTGGTAACATGAGCTATCATATAAGTTAACAAAGCATAGCTAGCAATATTAAAA 29255 Query 205495 GGTACACCTAAACCCATATCAGCTGATCTTTGATACATTTGACATGTAAGATATTTATTA 205554 || || || | ||||||||||||||||| ||||| | ||||| | | ||| | | Sbjct 29256 GGAACTCCAAGTCCCATATCAGCTGATCTCTGATATAACTGACAGGATA---ATTCACCA 29312 Query 205555 TTAATTACATGAAATTGTACAAAACAATGACAAGGTGGTATAACCATATTTTCA---ACA 205611 || |||| ||| || || |||||||| ||||| |||| | |||| |||| | | Sbjct 29313 TTGGCCACATAAAACTGCACTAAACAATGGCAAGGCGGTAGAGCCAT---TTCAGGGAGA 29369 Query 205612 TCTATAGGATTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtttattttttatttta 205671 || |||||||||| || | || || ||||| | | ||| |||| || || Sbjct 29370 TCCGTAGGATTCCATGCACACATAATCATTCTTCTATCTGTTGAATTAGTTTTGATGGTA 29429 Query 205672 tttatAATATGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATA 205731 || || | |||| |||||||||| |||| |||||||||||| | || ||| | | Sbjct 29430 TTGATTACCTGTGCCAATTGATCAATGCCTTTATTTGTATAATTCGAATGCATTCCCTTG 29489 Query 205732 TATTTAGCACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTC 205787 |||| ||||||| | ||||||||||| |||||||| | ||| || ||||| || || Sbjct 29490 TATTCAGCACCATAGTGACGCCATTGGAAACCATATATTGGTCCCAAATCGCCCTC 29545 >seq2259 Length=79244 Score = 113 bits (124), Expect = 7e-20 Identities = 166/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595 || |||||||| || | || || || || || || || || || | ||| | ||| || Sbjct 78291 ACGATGCAAATTTTCGTGAAAACTCTCACTGGTAAGACCATCACCCTTGAGGTCGAACCA 78232 Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 || || ||| ||| |||| ||||||||| || ||||||||||| || || || Sbjct 78231 TCCGACACCATTGAAAATGTAAAGGCGAAAATTCAGGACAAAGAAGGTATCCCCCCAGAC 78172 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 |||||| | | || ||||| || |||||| | |||||| |||| || | || ||| Sbjct 78171 CAACAACGTTTGATCTTTGCTGGTAAACAACTGGAGGATGGTCGCACCCTCTCCGACTAT 78112 Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTA 124770 ||||| ||||| || || || |||| ||||| | | || |||||||||||| Sbjct 78111 AATATCCAAAAGGAGTCCACCCTGCACTTGGTACTCAGATTGAGAGGTGGTATTA 78057 >seq4409 Length=33873 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595 |||||||| || || ||||||| |||| ||||| || || ||| | ||| | ||| | Sbjct 17754 ACAATGCAGATTTTCGTAAAGACCTTAACGGGCAAGACCATCACTCTTGAGGTCGAACCG 17813 Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 || || ||| ||| |||| |||||||| || || ||||| || || || || Sbjct 17814 TCGGACACTATTGAAAATGTAAAGGCAAAAATTCAGGACAAGGAAGGAATTCCGCCAGAC 17873 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 || || || | || || || || |||||| | || || | || || || |||||| Sbjct 17874 CAGCAGAGATTGATCTTCGCCGGCAAACAACTGGAAGACGGACGGACTTTGTCCGATTAT 17933 Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 ||||||||||| ||||| || || |||||||| | || | ||||||| Sbjct 17934 AATATTCAAAAGGAATCTACCTTACATTTGGTGCTTCGACTGAGAGGTGG 17983 >seq1411 Length=135556 Score = 89.7 bits (98), Expect = 8e-13 Identities = 120/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| ||||| ||||||||||| |||||||| || || || ||||| Sbjct 108648 GATACTATTGAAAATGTAAAAGCCAAAATTCAAGACAAAGAAGGAATTCCTCCAGATCAG 108707 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||| | || || || ||||||||| | || ||| | || || | || || || Sbjct 108708 CAGAGGTTGATCTTCGCTGGAAAACAACTTGAAGATGGACGTACTCTCTCTGACTACAAC 108767 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 || ||||| || || || || |||||||| | ||| | || ||||| Sbjct 108768 ATCCAAAAGGAGTCCACCTTACATTTGGTGCTCCGTCTTCGTGGTGG 108814 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 124635 AAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGAT 124694 || |||||||| || || || ||||| || | |||||||| |||||||||||||| ||| Sbjct 108458 AAGGAAGGTATTCCTCCAGACCAACAGAGATTGATTTTTGCCGGAAAACAATTAGAAGAT 108517 Query 124695 AGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGT 124754 | || || | || || || ||||| || || ||||| ||||| |||||| | | Sbjct 108518 GGACGTACCCTTTCTGACTACAACATTCAGAAGGAGTCAACATTGCACTTGGTTCTGAGA 108577 Query 124755 TTACGAGGTGGTAT 124768 ||| |||| || || Sbjct 108578 TTAAGAGGCGGAAT 108591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755305890892800