Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq4409 100 2e-16 seq1411 100 2e-16 >seq4409 Length=33873 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 |||||| || | ||||| || |||||||| || |||||| || ||| || || || Sbjct 17966 CACCAAATGTAAGGTAGATTCCTTTTGAATATTATAATCGGACAAAGTCCGTCCGTCTTC 17907 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 || ||||| || ||| |||| | | |||||| || || || || || |||||||| Sbjct 17906 CAGTTGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGCGGAATTCCTTCCTTGTCCTG 17847 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||||||| || || | ||| | ||||||| |||||||| | || | || || Sbjct 17846 AATTTTTGCCTTTACATTTTCAATAGTGTCCGACGGTTCGACCTCAAGAGTGATGGTCTT 17787 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| || | || ||||| ||||||||||| Sbjct 17786 GCCCGTTAAGGTCTTTACGAAAATCTGCAT 17757 >seq1411 Length=135556 Score = 100 bits (110), Expect = 2e-16 Identities = 139/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 118548 TCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTA--TCCTCGAGCTGTTTTCCAGCGT 118605 |||||||| |||||||| || | |||| | ||| || || |||||||| |||||| Sbjct 105890 TCTTTTTGTATGTTGTAGTC--TGATAGGGTGCGGCCGTCTTCAAGCTGTTTACCAGCGA 105833 Query 118606 AGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCT 118665 |||||||||| || || || || || || || |||||||| ||| ||| ||| || | Sbjct 105832 AGATGAGACGTTGTTGGTCTGGGGGGATCCCTTCCTTGTCCTGAATCTTTGCTTTCACGT 105773 Query 118666 GTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 118725 ||||| ||||| | || || || | || | ||||| || || || ||||| | Sbjct 105772 TTTCGATAGTGTCGGAAGGTTCAACTTCCAATGTGATGGTTTTACCAGTAAGGGTTTTCA 105713 Query 118726 CAAAAATCTGCAT 118738 | ||||||||||| Sbjct 105712 CGAAAATCTGCAT 105700 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 |||||| || | || ||||| ||||| |||||||| || | ||| || ||| || Sbjct 108797 CACCAAATGTAAGGTGGACTCCTTTTGGATGTTGTAGTCAGAGAGAGTACGTCCATCTTC 108738 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 || |||||||||||| |||| | | ||||||||| ||||| || || || |||||| Sbjct 108737 AAGTTGTTTTCCAGCGAAGATCAACCTCTGCTGATCTGGAGGAATTCCTTCTTTGTCTTG 108678 Query 118649 AATTTT 118654 |||||| Sbjct 108677 AATTTT 108672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433746352952032