Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22]
15,896 sequences; 151,272,366 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq4409 100 2e-16
seq1411 100 2e-16
>seq4409
Length=33873
Score = 100 bits (110), Expect = 2e-16
Identities = 148/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
|||||| || | ||||| || |||||||| || |||||| || ||| || || ||
Sbjct 17966 CACCAAATGTAAGGTAGATTCCTTTTGAATATTATAATCGGACAAAGTCCGTCCGTCTTC 17907
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
|| ||||| || ||| |||| | | |||||| || || || || || ||||||||
Sbjct 17906 CAGTTGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGCGGAATTCCTTCCTTGTCCTG 17847
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
||||||| || || | ||| | ||||||| |||||||| | || | || ||
Sbjct 17846 AATTTTTGCCTTTACATTTTCAATAGTGTCCGACGGTTCGACCTCAAGAGTGATGGTCTT 17787
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||| || | || ||||| |||||||||||
Sbjct 17786 GCCCGTTAAGGTCTTTACGAAAATCTGCAT 17757
>seq1411
Length=135556
Score = 100 bits (110), Expect = 2e-16
Identities = 139/193 (72%), Gaps = 4/193 (2%)
Strand=Plus/Minus
Query 118548 TCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTA--TCCTCGAGCTGTTTTCCAGCGT 118605
|||||||| |||||||| || | |||| | ||| || || |||||||| ||||||
Sbjct 105890 TCTTTTTGTATGTTGTAGTC--TGATAGGGTGCGGCCGTCTTCAAGCTGTTTACCAGCGA 105833
Query 118606 AGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCT 118665
|||||||||| || || || || || || || |||||||| ||| ||| ||| || |
Sbjct 105832 AGATGAGACGTTGTTGGTCTGGGGGGATCCCTTCCTTGTCCTGAATCTTTGCTTTCACGT 105773
Query 118666 GTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 118725
||||| ||||| | || || || | || | ||||| || || || ||||| |
Sbjct 105772 TTTCGATAGTGTCGGAAGGTTCAACTTCCAATGTGATGGTTTTACCAGTAAGGGTTTTCA 105713
Query 118726 CAAAAATCTGCAT 118738
| |||||||||||
Sbjct 105712 CGAAAATCTGCAT 105700
Score = 84.2 bits (92), Expect = 2e-11
Identities = 94/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
|||||| || | || ||||| ||||| |||||||| || | ||| || ||| ||
Sbjct 108797 CACCAAATGTAAGGTGGACTCCTTTTGGATGTTGTAGTCAGAGAGAGTACGTCCATCTTC 108738
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
|| |||||||||||| |||| | | ||||||||| ||||| || || || ||||||
Sbjct 108737 AAGTTGTTTTCCAGCGAAGATCAACCTCTGCTGATCTGGAGGAATTCCTTCTTTGTCTTG 108678
Query 118649 AATTTT 118654
||||||
Sbjct 108677 AATTTT 108672
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433746352952032
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |