Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq4409 102 1e-16 seq1411 102 1e-16 seq80 91.5 2e-13 >seq4409 Length=33873 Score = 102 bits (112), Expect = 1e-16 Identities = 107/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 |||||||| |||| | ||||||||||| |||||||| ||| || ||||||||||| || Sbjct 17983 CCACCTCTCAGTCGAAGCACCAAATGTAAGGTAGATTCCTTTTGA-ATATTATAATCGGA 17925 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| | | || || | |||||| || || || |||||||| ||||| || || || Sbjct 17924 CAAAGTCCGTCCGTCTTCCAGTTGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGCGG 17865 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| || || || Sbjct 17864 AATTCCTTCCTTGTCCTG 17847 >seq1411 Length=135556 Score = 102 bits (112), Expect = 1e-16 Identities = 106/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| | ||| | | ||||||||||| || || || || || || || || | Sbjct 108816 TTCCACCACGAAGACGGAGCACCAAATGTAAGGTGGACTCCTTTTGGATGTTGTAGTCAG 108757 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | ||||| | | ||| || | |||||||||||| || ||||| || |||||||| |||| Sbjct 108756 AGAGAGTACGTCCATCTTCAAGTTGTTTTCCAGCGAAGATCAACCTCTGCTGATCTGGAG 108697 Query 146169 GAATTCCTTCTTTATCTTG 146187 ||||||||||||| ||||| Sbjct 108696 GAATTCCTTCTTTGTCTTG 108678 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| ||||| | ||| | ||||| || || || || || || || || || || | Sbjct 108590 TTCCGCCTCTTAATCTCAGAACCAAGTGCAATGTTGACTCCTTCTGAATGTTGTAGTCAG 108531 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 |||| || | | ||| |||||||||||||| |||||||||||||| || || || |||| Sbjct 108530 AAAGGGTACGTCCATCTTCTAATTGTTTTCCGGCAAAAATCAATCTCTGTTGGTCTGGAG 108471 Query 146169 GAATTCCTTCTTT 146181 |||| ||||| || Sbjct 108470 GAATACCTTCCTT 108458 >seq80 Length=40681 Score = 91.5 bits (100), Expect = 2e-13 Identities = 109/147 (74%), Gaps = 1/147 (1%) Strand=Plus/Minus Query 10481 TAAATTTATTGATATTGGAGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGT 10540 ||| |||||| | || ||||||||| ||||||| || || ||||| | | ||| Sbjct 1713 TAATTTTATTTTT-TTACAGCTGGAGTTGTTGACGAGGACTACAGAGGTGAACTTAAAGT 1655 Query 10541 AATATTATTTAATCATTCTAATGAAGATTTTATAATAAATAGAGGAGATAGAATATCTCA 10600 | || ||||||||||||| |||||||||||| | || | ||| |||||||| |||| Sbjct 1654 AGTACTATTTAATCATTCGGATGAAGATTTTAATGTGAAAAAAGGTGATAGAATTGCTCA 1595 Query 10601 ATTAATATGTGAAAAAATTTTATATCC 10627 || || ||||| || |||| ||||| Sbjct 1594 GTTGATTTGTGAGAAGATTTATTATCC 1568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743378661304320