Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22]
15,896 sequences; 151,272,366 total letters
Query= NC_002520.1
Length=232392
Score E
Sequences producing significant alignments: (Bits) Value
seq4409 102 1e-16
seq1411 102 1e-16
seq80 91.5 2e-13
>seq4409
Length=33873
Score = 102 bits (112), Expect = 1e-16
Identities = 107/138 (78%), Gaps = 2/138 (1%)
Strand=Plus/Minus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109
|||||||| |||| | ||||||||||| |||||||| ||| || ||||||||||| ||
Sbjct 17983 CCACCTCTCAGTCGAAGCACCAAATGTAAGGTAGATTCCTTTTGA-ATATTATAATCGGA 17925
Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169
| ||| | | || || | |||||| || || || |||||||| ||||| || || ||
Sbjct 17924 CAAAGTCCGTCCGTCTTCCAGTTGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGCGG 17865
Query 146170 AATTCCTTCTTTATCTTG 146187
||||||||| || || ||
Sbjct 17864 AATTCCTTCCTTGTCCTG 17847
>seq1411
Length=135556
Score = 102 bits (112), Expect = 1e-16
Identities = 106/139 (76%), Gaps = 0/139 (0%)
Strand=Plus/Minus
Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108
||||||| | ||| | | ||||||||||| || || || || || || || || |
Sbjct 108816 TTCCACCACGAAGACGGAGCACCAAATGTAAGGTGGACTCCTTTTGGATGTTGTAGTCAG 108757
Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168
| ||||| | | ||| || | |||||||||||| || ||||| || |||||||| ||||
Sbjct 108756 AGAGAGTACGTCCATCTTCAAGTTGTTTTCCAGCGAAGATCAACCTCTGCTGATCTGGAG 108697
Query 146169 GAATTCCTTCTTTATCTTG 146187
||||||||||||| |||||
Sbjct 108696 GAATTCCTTCTTTGTCTTG 108678
Score = 91.5 bits (100), Expect = 2e-13
Identities = 100/133 (75%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108
|||| ||||| | ||| | ||||| || || || || || || || || || || |
Sbjct 108590 TTCCGCCTCTTAATCTCAGAACCAAGTGCAATGTTGACTCCTTCTGAATGTTGTAGTCAG 108531
Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168
|||| || | | ||| |||||||||||||| |||||||||||||| || || || ||||
Sbjct 108530 AAAGGGTACGTCCATCTTCTAATTGTTTTCCGGCAAAAATCAATCTCTGTTGGTCTGGAG 108471
Query 146169 GAATTCCTTCTTT 146181
|||| ||||| ||
Sbjct 108470 GAATACCTTCCTT 108458
>seq80
Length=40681
Score = 91.5 bits (100), Expect = 2e-13
Identities = 109/147 (74%), Gaps = 1/147 (1%)
Strand=Plus/Minus
Query 10481 TAAATTTATTGATATTGGAGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGT 10540
||| |||||| | || ||||||||| ||||||| || || ||||| | | |||
Sbjct 1713 TAATTTTATTTTT-TTACAGCTGGAGTTGTTGACGAGGACTACAGAGGTGAACTTAAAGT 1655
Query 10541 AATATTATTTAATCATTCTAATGAAGATTTTATAATAAATAGAGGAGATAGAATATCTCA 10600
| || ||||||||||||| |||||||||||| | || | ||| |||||||| ||||
Sbjct 1654 AGTACTATTTAATCATTCGGATGAAGATTTTAATGTGAAAAAAGGTGATAGAATTGCTCA 1595
Query 10601 ATTAATATGTGAAAAAATTTTATATCC 10627
|| || ||||| || |||| |||||
Sbjct 1594 GTTGATTTGTGAGAAGATTTATTATCC 1568
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 743378661304320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |