Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22]
15,896 sequences; 151,272,366 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq2028 262 4e-65
>seq2028
Length=154558
Score = 262 bits (290), Expect = 4e-65
Identities = 499/725 (69%), Gaps = 10/725 (1%)
Strand=Plus/Plus
Query 15943 TTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATT 16002
||| | |||||| | ||| |||||||||| || |||||||| |||||| ||||| |
Sbjct 59775 TTTCTTATATTCGCCCACTTTCTTTTCAAAAAAGTTTGTTTTACCTTCTGTAGAAATGAT 59834
Query 16003 TTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAA 16062
|||||| ||||| ||||| ||| || |||| ||| | ||| || ||||| ||
Sbjct 59835 CGTCATAAAGTCAAACGGATTCGTTGCACCATAGATTTTCTTGCAGCCTAATTCACTTAA 59894
Query 16063 TAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAA 16122
|| | ||| || ||||||||||||||||| ||| || | || |||||||| || |
Sbjct 59895 CAAACGATCAGCTACAAATTCTATATACTGACACATCAATTTGCAATTCATTCCAATCAG 59954
Query 16123 TTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTAT 16182
| || || | || || | || || | || |||||| |||| || || || ||
Sbjct 59955 ACTGACTGGCAAAGCCTCAGACAAGAACTCTTGTTCTATTGTAACTGCATCTGCAATAAT 60014
Query 16183 ATCTCTTACTACACTATTTAACGGAGGGTT-TAATA-AG-TGTTTAAACATTATACAAGC 16239
| ||||| || | | | || || | || || ||| || | || || ||
Sbjct 60015 ACTGGTTACT---CTTTCTTGTGATGGTTTCTGATGCAGATGTGAGAATAGTAAGCATGC 60071
Query 16240 AAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGG 16299
|||||||||||| | ||||| || || ||| || || ||||||||||| | ||| ||
Sbjct 60072 AAAATCACAATGTAGACCTTCATCTCTGGATATCAATTCATTTGAAAATGTTAAACCGGG 60131
Query 16300 CATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACC 16359
||| || || ||||| || | ||| || || || ||||| |||| || || || ||
Sbjct 60132 CATAAGACCACGTTTCTTTAACCAGAAAATCGCTGCAAAGCTACCACTGAAAAAAATGCC 60191
Query 16360 TTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttct-atcc 16418
|||||| || ||||| || ||||||| || ||| ||| || ||| | || ||||
Sbjct 60192 TTCAACGGCAGCAAAAGCCACCAATCTTTCGCCGAACG-AGGATGTTTTCGAGCTAATCC 60250
Query 16419 attttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATA 16478
| ||| ||||||| ||||| | |||||||| |||| | || || || ||||| |
Sbjct 60251 ACTTTAGGGCCCAATCAGCTTTCTTCTTAACACACGGCATGGTTTCAATAGCGTTAAACA 60310
Query 16479 AATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTG 16538
| | | |||||| ||| ||| ||||| || || || ||| || |||||||| |
Sbjct 60311 AGAACTCTTTTTCATTGGGATCGCTGATATACGTTTCAATAAGTTTGCTGTACATTTCAG 60370
Query 16539 AATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTA 16598
|||| ||||| || ||||| ||||| || |||||||| || | |||||| | | ||| |
Sbjct 60371 AATGGATATTTTCAATTGCAATCTGGAATCCATAAAAACAACGAGCTTCAGTCACTTGAA 60430
Query 16599 CTTC-AGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAA 16657
|||| || | ||| | ||| | | || || || || || ||||| || ||||||
Sbjct 60431 CTTCTTGACTGAAA-CGTTCCACAAGATTCTCATTTACAATACCATCTGAGGCAGCAAAA 60489
Query 16658 AACGC 16662
|| ||
Sbjct 60490 AAAGC 60494
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462420098865600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |