Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq2028 262 4e-65 >seq2028 Length=154558 Score = 262 bits (290), Expect = 4e-65 Identities = 499/725 (69%), Gaps = 10/725 (1%) Strand=Plus/Plus Query 15943 TTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATT 16002 ||| | |||||| | ||| |||||||||| || |||||||| |||||| ||||| | Sbjct 59775 TTTCTTATATTCGCCCACTTTCTTTTCAAAAAAGTTTGTTTTACCTTCTGTAGAAATGAT 59834 Query 16003 TTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAA 16062 |||||| ||||| ||||| ||| || |||| ||| | ||| || ||||| || Sbjct 59835 CGTCATAAAGTCAAACGGATTCGTTGCACCATAGATTTTCTTGCAGCCTAATTCACTTAA 59894 Query 16063 TAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAA 16122 || | ||| || ||||||||||||||||| ||| || | || |||||||| || | Sbjct 59895 CAAACGATCAGCTACAAATTCTATATACTGACACATCAATTTGCAATTCATTCCAATCAG 59954 Query 16123 TTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTAT 16182 | || || | || || | || || | || |||||| |||| || || || || Sbjct 59955 ACTGACTGGCAAAGCCTCAGACAAGAACTCTTGTTCTATTGTAACTGCATCTGCAATAAT 60014 Query 16183 ATCTCTTACTACACTATTTAACGGAGGGTT-TAATA-AG-TGTTTAAACATTATACAAGC 16239 | ||||| || | | | || || | || || ||| || | || || || Sbjct 60015 ACTGGTTACT---CTTTCTTGTGATGGTTTCTGATGCAGATGTGAGAATAGTAAGCATGC 60071 Query 16240 AAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGG 16299 |||||||||||| | ||||| || || ||| || || ||||||||||| | ||| || Sbjct 60072 AAAATCACAATGTAGACCTTCATCTCTGGATATCAATTCATTTGAAAATGTTAAACCGGG 60131 Query 16300 CATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACC 16359 ||| || || ||||| || | ||| || || || ||||| |||| || || || || Sbjct 60132 CATAAGACCACGTTTCTTTAACCAGAAAATCGCTGCAAAGCTACCACTGAAAAAAATGCC 60191 Query 16360 TTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttct-atcc 16418 |||||| || ||||| || ||||||| || ||| ||| || ||| | || |||| Sbjct 60192 TTCAACGGCAGCAAAAGCCACCAATCTTTCGCCGAACG-AGGATGTTTTCGAGCTAATCC 60250 Query 16419 attttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATA 16478 | ||| ||||||| ||||| | |||||||| |||| | || || || ||||| | Sbjct 60251 ACTTTAGGGCCCAATCAGCTTTCTTCTTAACACACGGCATGGTTTCAATAGCGTTAAACA 60310 Query 16479 AATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTG 16538 | | | |||||| ||| ||| ||||| || || || ||| || |||||||| | Sbjct 60311 AGAACTCTTTTTCATTGGGATCGCTGATATACGTTTCAATAAGTTTGCTGTACATTTCAG 60370 Query 16539 AATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTA 16598 |||| ||||| || ||||| ||||| || |||||||| || | |||||| | | ||| | Sbjct 60371 AATGGATATTTTCAATTGCAATCTGGAATCCATAAAAACAACGAGCTTCAGTCACTTGAA 60430 Query 16599 CTTC-AGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAA 16657 |||| || | ||| | ||| | | || || || || || ||||| || |||||| Sbjct 60431 CTTCTTGACTGAAA-CGTTCCACAAGATTCTCATTTACAATACCATCTGAGGCAGCAAAA 60489 Query 16658 AACGC 16662 || || Sbjct 60490 AAAGC 60494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462420098865600