Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22] 15,896 sequences; 151,272,366 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq173 168 5e-37 >seq173 Length=58411 Score = 168 bits (186), Expect = 5e-37 Identities = 251/356 (71%), Gaps = 0/356 (0%) Strand=Plus/Minus Query 20209 CGTCAAGAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAA 20268 ||| | ||||| |||||||| || | ||||| || |||||| | || | ||| |||||| Sbjct 29551 CGTGATGAGGGCGATTTGGGACCAATATATGGTTTCCAATGGCGTCACTATGGTGCTGAA 29492 Query 20269 TATGTTGACATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATT 20328 || | ||| | | |||||| |||| | |||||||| | | || || Sbjct 29491 TACAAGGGAATGCATTCGAATTATACAAATAAAGGCATTGATCAATTGGCACAGGTAATC 29432 Query 20329 AATTTAATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAA 20388 ||| || ||||| || ||| || |||||||| ||| | || || ||||| ||| Sbjct 29431 AATACCATCAAAACTAATTCAACAGATAGAAGAATGATTATGTGTGCATGGAATCCTACG 29372 Query 20389 GATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAAT 20448 ||| | ||| ||||||| | || || || ||| || || ||||| || || ||| Sbjct 29371 GATCTCCCTGAAATGGCTCTACCGCCTTGCCATTGTTTAGTGCAGTTTTATGTGGCCAAT 29312 Query 20449 AATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTC 20508 |||||| || ||||| | ||||| |||| |||||||||||||| || |||||||| Sbjct 29311 GGTGAATTATCCTGTCAGTTATATCAGAGATCAGCTGATATGGGACTTGGAGTTCCTTTT 29252 Query 20509 AATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAA 20564 |||||||| || ||||| || | || |||||||| || |||||||| || |||| Sbjct 29251 AATATTGCTAGCTATGCTTTGTTAACTTATATGATAGCTCATGTTACCAATCTAAA 29196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399106665085720