Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hypothenemus_20hampei_20[genbank_20GCA_5F001012855.1_202015-05-22]
15,896 sequences; 151,272,366 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq2259 131 1e-25
seq1411 95.1 1e-14
seq4409 93.3 3e-14
>seq2259
Length=79244
Score = 131 bits (144), Expect = 1e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169
|||||||||||||| | |||||||||||| ||| |||||| || || || ||||||
Sbjct 78062 CCACCTCTCAATCTGAGTACCAAGTGCAGGGTGGACTCCTTTTGGATATTATAGTCGGAG 78121
Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229
|| |||| | || ||||||||||| || || || ||||| || |||||||| || ||
Sbjct 78122 AGGGTGCGACCATCCTCCAGTTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGGGGG 78181
Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289
| ||| || |||||| |||||| ||| || | | | |||| || |||
Sbjct 78182 ATACCTTCTTTGTCCTGAATTTTCGCCTTTACATTTTCAATGGTGTCGGATGGTTCGACC 78241
Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| | ||| || ||||| || || ||||| ||||| || ||||||||
Sbjct 78242 TCAAGGGTGATGGTCTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 78288
>seq1411
Length=135556
Score = 95.1 bits (104), Expect = 1e-14
Identities = 100/132 (76%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169
|| ||||| ||||| | |||||||||| || |||||||||||||||||||||
Sbjct 108588 CCGCCTCTTAATCTCAGAACCAAGTGCAATGTTGACTCCTTCTGAATGTTGTAGTCAGAA 108529
Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229
|| || | || || | |||||||||||| || ||||| | ||||||||| |||||
Sbjct 108528 AGGGTACGTCCATCTTCTAATTGTTTTCCGGCAAAAATCAATCTCTGTTGGTCTGGAGGA 108469
Query 45230 ACACCCTCCTTG 45241
| ||| ||||||
Sbjct 108468 ATACCTTCCTTG 108457
>seq4409
Length=33873
Score = 93.3 bits (102), Expect = 3e-14
Identities = 158/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 45108 CGCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGT 45167
|||||||||||| || | ||||| || | || ||||| ||||| || || |||
Sbjct 17985 CGCCACCTCTCAGTCGAAGCACCAAATGTAAGGTAGATTCCTTTTGAATATTATAATCGG 17926
Query 45168 TCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAG 45227
|| || |||| ||||||||||| |||||||| ||||| | ||| ||||| || |
Sbjct 17925 ACAAAGTCCGTCCGTCTTCCAGTTGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGCG 17866
Query 45228 GCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCA 45287
| | || ||||||||| ||||||| ||| || | | ||||| || |
Sbjct 17865 GAATTCCTTCCTTGTCCTGAATTTTTGCCTTTACATTTTCAATAGTGTCCGACGGTTCGA 17806
Query 45288 CCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|||| | || || ||||||||||| | ||||| || || || |||||
Sbjct 17805 CCTCAAGAGTGATGGTCTTGCCCGTTAAGGTCTTTACGAAAATCTGCAT 17757
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 394998661093816
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |